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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:20.1TPM
GTEx:11.3RPKM
FANTOM5:67.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA036677

  

Antibody HPA036678

  

Antibody HPA061398

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Medium   Low   Medium  

Peripheral nerve/ganglion

 High   High   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

20.1
overview Male, age 54 Sample 1
TPM: 15.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 16.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 25.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 30.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 20.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.3
Samples: 149

Max RPKM: 22.4
Min RPKM: 6.3
Std RPKM: 2.1
Median RPKM: 9.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 22.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 18.4
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 17.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 15.0
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 14.0
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 13.5
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 13.5
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 13.4
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 13.4
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 13.4
Show all
Colon - Transverse
RPKM: 12.0
Samples: 196

Max RPKM: 26.3
Min RPKM: 4.8
Std RPKM: 3.2
Median RPKM: 11.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 26.3
GTEX-144GM-1226-SM-5LU52 20-29 years, male 24.2
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 22.1
GTEX-1128S-1626-SM-5H12O 60-69 years, female 21.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 19.8
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 19.8
GTEX-QMRM-1226-SM-447C6 50-59 years, male 19.4
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 19.1
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 19.0
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 18.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

67.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 67.0
FF:10014-101C5 62,83,84 years, mixed 67.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.