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DMTF1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.7TPM
GTEx:13.8RPKM
FANTOM5:36.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA023846

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

15.7
overview Male, age 54 Sample 1
TPM: 9.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 17
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 23
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 18.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 15.1
Samples: 149

Max RPKM: 23.3
Min RPKM: 6.0
Std RPKM: 3.5
Median RPKM: 14.8
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 23.3
GTEX-V955-1726-SM-4JBHF 60-69 years, male 22.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 22.5
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 22.3
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 22.0
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 21.6
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 21.4
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 20.9
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 20.9
GTEX-145LS-2926-SM-5O99G 60-69 years, female 20.6
Show all
Colon - Transverse
RPKM: 12.8
Samples: 196

Max RPKM: 20.6
Min RPKM: 3.0
Std RPKM: 3.0
Median RPKM: 12.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 20.6
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 19.9
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 19.4
GTEX-QEL4-1926-SM-4R1JI 50-59 years, male 19.4
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 19.2
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 19.1
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 19.1
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 19.0
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 18.8
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 18.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

36.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 36.0
FF:10014-101C5 62,83,84 years, mixed 36.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.