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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:1.2TPM
GTEx:0.8RPKM
FANTOM5:6.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA005733

  

Endothelial cells

 Not detected  

Glandular cells

 High  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

1.2
overview Male, age 54 Sample 1
TPM: 1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.6
Samples: 149

Max RPKM: 1.3
Min RPKM: 0.2
Std RPKM: 0.2
Median RPKM: 0.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 1.3
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 1.2
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 1.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 1.1
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 1.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 1.0
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 1.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 1.0
GTEX-1122O-1426-SM-5H11R 60-69 years, female 0.9
Show all
Colon - Transverse
RPKM: 1.0
Samples: 196

Max RPKM: 2.5
Min RPKM: 0.2
Std RPKM: 0.4
Median RPKM: 1.1
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 2.5
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 2.3
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 2.0
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 2.0
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 1.9
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 1.9
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 1.8
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 1.8
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 1.8
GTEX-1211K-1726-SM-5FQUJ 60-69 years, female 1.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

6.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 6.2
FF:10014-101C5 62,83,84 years, mixed 6.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.