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IQSEC1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:10.2TPM
GTEx:9.9RPKM
FANTOM5:12.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA038143

  

Antibody HPA038144

  

Endothelial cells

 High   High  

Glandular cells

 Not detected   High  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

10.2
overview Male, age 54 Sample 1
TPM: 13.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 6.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.3
Samples: 149

Max RPKM: 17.4
Min RPKM: 6.9
Std RPKM: 2.0
Median RPKM: 11.5
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 17.4
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 16.6
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 16.4
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 16.1
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 15.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 15.2
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 14.9
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 14.8
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 14.7
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 14.6
Show all
Colon - Transverse
RPKM: 8.7
Samples: 196

Max RPKM: 19.6
Min RPKM: 2.4
Std RPKM: 3.1
Median RPKM: 8.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 19.6
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 17.3
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 16.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 16.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 15.7
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 15.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 15.1
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 15.1
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 14.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 14.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

12.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 12.6
FF:10014-101C5 62,83,84 years, mixed 12.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.