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SEMA6B

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.6TPM
GTEx:4.4RPKM
FANTOM5:10.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA055778

  

Antibody HPA058523

  

Antibody CAB025157

  

Endothelial cells

 Medium   Not detected   Not detected  

Glandular cells

 Low   Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected  
        
     
     

COLON - HPA RNA-seq

Average TPM

2.6
overview Male, age 54 Sample 1
TPM: 2.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.3
Samples: 149

Max RPKM: 25.4
Min RPKM: 0.5
Std RPKM: 3.1
Median RPKM: 3.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 25.4
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 12.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 11.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 11.2
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 11.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 10.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 10.4
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 10.2
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 10.1
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 9.9
Show all
Colon - Transverse
RPKM: 4.4
Samples: 196

Max RPKM: 28.5
Min RPKM: 0.9
Std RPKM: 3.2
Median RPKM: 3.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 28.5
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 15.8
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 15.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 12.7
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 12.6
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 12.5
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 11.7
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 11.5
GTEX-144GM-1226-SM-5LU52 20-29 years, male 10.6
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 9.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

10.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 10.5
FF:10014-101C5 62,83,84 years, mixed 10.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.