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COLON - Expression summary

RNA expression
HPA:22.4TPM
GTEx:16.9RPKM
FANTOM5:157.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

22.4
overview Male, age 54 Sample 1
TPM: 24.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 29.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 15.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 22.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 17.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 30.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 25.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 17
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.6
Samples: 149

Max RPKM: 30.4
Min RPKM: 6.5
Std RPKM: 4.2
Median RPKM: 17.8
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 30.4
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 30.1
GTEX-13111-1926-SM-5GCOL 50-59 years, male 28.7
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 28.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 27.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 27.9
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 27.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 27.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 26.8
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 26.2
Show all
Colon - Transverse
RPKM: 15.7
Samples: 196

Max RPKM: 32.5
Min RPKM: 6.4
Std RPKM: 4.5
Median RPKM: 14.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 32.5
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 31.4
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 27.6
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 26.8
GTEX-S341-1426-SM-4AD6U 40-49 years, female 26.4
GTEX-Y114-1526-SM-4TT79 50-59 years, female 26.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 25.9
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 24.9
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 24.9
GTEX-117YX-0826-SM-5H11J 50-59 years, male 24.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

157.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 157.9
FF:10014-101C5 62,83,84 years, mixed 157.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.