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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.8TPM
GTEx:7.8RPKM
FANTOM5:21.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA019947

  

Antibody HPA019948

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

15.8
overview Male, age 54 Sample 1
TPM: 13.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 20.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 15.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 21.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 14.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.4
Samples: 149

Max RPKM: 21.5
Min RPKM: 3.1
Std RPKM: 2.0
Median RPKM: 7.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 21.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 12.7
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 11.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 11.3
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 11.0
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 11.0
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 10.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 10.7
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 10.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 10.6
Show all
Colon - Transverse
RPKM: 8.1
Samples: 196

Max RPKM: 21.7
Min RPKM: 1.8
Std RPKM: 2.6
Median RPKM: 7.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 21.7
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 17.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 17.4
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 15.9
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 15.4
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 14.8
GTEX-QMRM-1226-SM-447C6 50-59 years, male 14.5
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 14.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 13.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 13.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.7
FF:10014-101C5 62,83,84 years, mixed 21.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.