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WSCD1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.8TPM
GTEx:1.7RPKM
FANTOM5:2.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA015919

  

Endothelial cells

 Not detected  

Glandular cells

 High  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

6.8
overview Male, age 54 Sample 1
TPM: 3.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.4
Samples: 149

Max RPKM: 1.9
Min RPKM: 0.0
Std RPKM: 0.3
Median RPKM: 0.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 1.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 1.8
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 1.3
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 1.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1.2
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 1.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 1.1
GTEX-145LS-2926-SM-5O99G 60-69 years, female 1.0
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 1.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 1.0
Show all
Colon - Transverse
RPKM: 2.7
Samples: 196

Max RPKM: 7.3
Min RPKM: 0.1
Std RPKM: 1.8
Median RPKM: 2.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 7.3
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 7.2
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 6.7
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 6.4
GTEX-R55D-1826-SM-48FEF 50-59 years, male 6.4
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 6.3
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 6.1
GTEX-S4UY-0826-SM-4AD4Z 40-49 years, female 5.9
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 5.8
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 5.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2.3
FF:10014-101C5 62,83,84 years, mixed 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.