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SMG5

SOFT TISSUE - Expression summary

RNA expression
HPA:24.1TPM
GTEx:20.3RPKM
FANTOM5:33.8Tags Per Million

SOFT TISSUE - Annotated protein expression

Pending normal tissue analysis

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

24.1
N/A Female, age 80 Sample 1
TPM: 22.5
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45 Sample 2
TPM: 15.7
N/A Female, age 57 Sample 3
TPM: 16.9
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74 Sample 4
TPM: 40.7
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59 Sample 5
TPM: 24.9
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

20.3

GTEx sample id

Sample description

RPKM
Adipose - Subcutaneous
RPKM: 19.8
Samples: 350

Max RPKM: 35.4
Min RPKM: 10.7
Std RPKM: 4.0
Median RPKM: 19.3
GTEX-11EQ8-0226-SM-5EQ5G 60-69 years, male 35.4
GTEX-11I78-2626-SM-5Q5AI 50-59 years, female 34.4
GTEX-13NYS-0226-SM-5MR49 60-69 years, male 34.2
GTEX-X4XY-0326-SM-46MVZ 60-69 years, male 32.7
GTEX-NPJ8-0226-SM-48TBN 40-49 years, male 32.5
GTEX-ZPCL-2126-SM-57WFZ 60-69 years, female 31.5
GTEX-ZVP2-1826-SM-5GU62 50-59 years, male 31.1
GTEX-11DXX-2326-SM-5Q5A2 60-69 years, female 29.9
GTEX-QLQW-1226-SM-2S1Q9 30-39 years, male 29.8
GTEX-X88G-0226-SM-4GIE4 30-39 years, male 28.9
Show all
Adipose - Visceral (Omentum)
RPKM: 21.1
Samples: 227

Max RPKM: 45.1
Min RPKM: 11.5
Std RPKM: 5.3
Median RPKM: 20.2
GTEX-13IVO-2426-SM-5K7V9 70-79 years, male 45.1
GTEX-13PDP-1226-SM-5K7TW 60-69 years, male 42.0
GTEX-11I78-0226-SM-5HL6R 50-59 years, female 40.8
GTEX-WWTW-1326-SM-4MVNT 50-59 years, male 36.6
GTEX-13S86-0926-SM-5SI6I 40-49 years, male 36.5
GTEX-XAJ8-0226-SM-4GIB2 40-49 years, male 33.8
GTEX-1122O-0926-SM-5N9C9 60-69 years, female 33.2
GTEX-ZAJG-1626-SM-5HL7I 50-59 years, female 31.8
GTEX-11WQK-1526-SM-5EGKN 50-59 years, male 31.7
GTEX-ZPCL-1026-SM-5GCOX 60-69 years, female 31.3
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

33.8

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 33.8
FF:10010-101C1 65,65,76 years, mixed 33.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.