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SMG5

COLON - Expression summary

RNA expression
HPA:23.4TPM
GTEx:28.6RPKM
FANTOM5:52.2Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

23.4
overview Male, age 54 Sample 1
TPM: 26.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 25.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 27.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 25.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 26.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 26.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 28.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

28.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 28.4
Samples: 149

Max RPKM: 47.4
Min RPKM: 16.5
Std RPKM: 6.0
Median RPKM: 28.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 47.4
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 47.2
GTEX-V955-1726-SM-4JBHF 60-69 years, male 42.7
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 42.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 42.1
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 41.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 41.4
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 40.2
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 39.8
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 38.8
Show all
Colon - Transverse
RPKM: 28.7
Samples: 196

Max RPKM: 45.6
Min RPKM: 11.9
Std RPKM: 5.2
Median RPKM: 28.6
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 45.6
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 43.6
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 43.0
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 41.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 40.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 38.9
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 37.5
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 37.4
GTEX-PWCY-1026-SM-48TD4 20-29 years, female 37.3
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 37.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

52.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 52.2
FF:10014-101C5 62,83,84 years, mixed 52.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.