We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ACPP
  • premium

    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA SPLEEN

GENE/PROTEIN

Antibody validation


Dictionary

Spleen

Tissue proteome

Spleen

SPLEEN - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:2.2TPM
GTEx:0.8RPKM
FANTOM5:10.3Tags Per Million

SPLEEN - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in red pulp:Not detected
Cells in white pulp:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA004335

 

Antibody HPA063916

 

Antibody CAB000071

 

Cells in red pulp

Not detected   Not detected   Not detected  

Cells in white pulp

Not detected   Not detected   Not detected  
     
     
     

SPLEEN - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

2.2

overview Female, age 60 Sample 1
TPM: 2.4
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Male, age 17 Sample 2
TPM: 1.9
Cell types%
Lymphocytes: 40
Macrophages: 35
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 5
overview Male, age 20 Sample 3
TPM: 2
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Female, age 19 Sample 4
TPM: 1.3
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 65 Sample 5
TPM: 3.2
Cell types%
Lymphocytes: 35
Macrophages: 30
Endothelial cells: 20
Fibroblasts: 10
Other cell types: 5

SPLEEN - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

0.8

GTEx sample id

Sample description

RPKM

Spleen
RPKM: 0.8
Samples: 104

Max RPKM: 3.3
Min RPKM: 0.1
Std RPKM: 0.5
Median RPKM: 0.7
GTEX-ZV6S-0826-SM-5NQ6Z 40-49 years, female 3.3
GTEX-ZZPU-0126-SM-5E446 50-59 years, female 2.6
GTEX-13X6H-0726-SM-5Q5BX 50-59 years, female 2.3
GTEX-13S86-0126-SM-5S2PI 40-49 years, male 2.1
GTEX-146FQ-0626-SM-5LU9U 30-39 years, male 1.9
GTEX-ZP4G-0326-SM-4YCEF 20-29 years, female 1.9
GTEX-U4B1-0526-SM-4DXTK 40-49 years, male 1.6
GTEX-YEC4-0126-SM-4W21T 40-49 years, male 1.6
GTEX-131XE-1126-SM-5EGHW 50-59 years, male 1.5
GTEX-139YR-0426-SM-5IFFV 50-59 years, male 1.5
GTEX-VJYA-0126-SM-4KL1P 60-69 years, male 1.4
GTEX-Y3I4-0126-SM-4TT26 50-59 years, male 1.4
GTEX-ZVP2-0526-SM-51MSC 50-59 years, male 1.4
GTEX-T5JW-0126-SM-4DM6K 20-29 years, female 1.3
GTEX-Y8LW-0126-SM-4VBS1 50-59 years, female 1.3
GTEX-144GN-2126-SM-5O99D 50-59 years, male 1.2
GTEX-S4Z8-0226-SM-4AD5K 60-69 years, male 1.2
GTEX-11P81-1326-SM-5GU5S 30-39 years, female 1.1
GTEX-14DAR-0326-SM-5S2PS 50-59 years, male 1.1
GTEX-ZAB5-0526-SM-5CVMU 50-59 years, male 1.1
GTEX-11EQ9-0426-SM-5A5JY 30-39 years, male 1.0
GTEX-11LCK-0126-SM-5A5M5 30-39 years, male 1.0
GTEX-13111-0126-SM-5EGHO 50-59 years, male 1.0
GTEX-QMRM-0226-SM-4R1K7 50-59 years, male 1.0
GTEX-U3ZN-0126-SM-4DXUM 30-39 years, female 1.0
GTEX-UJHI-0126-SM-4IHLP 50-59 years, female 1.0
GTEX-WHWD-0126-SM-4OORS 50-59 years, male 1.0
GTEX-X585-1826-SM-4QAS3 50-59 years, male 1.0
GTEX-XMK1-0126-SM-4B65F 40-49 years, male 1.0
GTEX-Y3IK-0126-SM-4WWE9 50-59 years, female 1.0
GTEX-Z9EW-0726-SM-5HL9H 40-49 years, male 1.0
GTEX-11NSD-0426-SM-5N9CR 20-29 years, male 0.9
GTEX-11XUK-0426-SM-5EQML 40-49 years, female 0.9
GTEX-132QS-0226-SM-5IFFZ 60-69 years, male 0.9
GTEX-QLQW-0126-SM-447BK 30-39 years, male 0.9
GTEX-XPVG-0626-SM-4B65B 50-59 years, male 0.9
GTEX-Y5LM-0326-SM-4VBRN 40-49 years, female 0.9
GTEX-ZDTT-1026-SM-5KM19 60-69 years, male 0.9
GTEX-ZPU1-1026-SM-4YCEQ 40-49 years, male 0.9
GTEX-ZYFG-0726-SM-5GIDX 60-69 years, female 0.9
GTEX-11VI4-0126-SM-5GU6Z 40-49 years, female 0.8
GTEX-131XG-0426-SM-5IFGD 50-59 years, female 0.8
GTEX-13U4I-1626-SM-5IFFR 40-49 years, female 0.8
GTEX-14E6E-1226-SM-5S2R5 30-39 years, male 0.8
GTEX-O5YT-0926-SM-48TDG 20-29 years, male 0.8
GTEX-POMQ-0126-SM-48TD6 20-29 years, female 0.8
GTEX-QV31-0126-SM-447BP 30-39 years, male 0.8
GTEX-WFON-0126-SM-4LVM9 40-49 years, male 0.8
GTEX-XAJ8-0126-SM-47JYG 40-49 years, male 0.8
GTEX-ZYWO-0226-SM-5GZX3 40-49 years, female 0.8
GTEX-11DXX-0726-SM-5H12X 60-69 years, female 0.7
GTEX-12WSJ-0526-SM-5GCOZ 40-49 years, female 0.7
GTEX-12WSN-0126-SM-5DUX5 40-49 years, male 0.7
GTEX-1399S-0226-SM-5IFFG 30-39 years, female 0.7
GTEX-PLZ6-0126-SM-48TC6 30-39 years, male 0.7
GTEX-XGQ4-0126-SM-4AT4H 50-59 years, male 0.7
GTEX-11P7K-0426-SM-5BC5H 30-39 years, male 0.6
GTEX-12WSG-0926-SM-5EGIH 50-59 years, female 0.6
GTEX-147F3-0126-SM-5NQBJ 50-59 years, female 0.6
GTEX-P4PP-0926-SM-48TBZ 30-39 years, female 0.6
GTEX-PX3G-0926-SM-48U12 20-29 years, female 0.6
GTEX-X4LF-0226-SM-4QAS8 50-59 years, male 0.6
GTEX-YB5K-1926-SM-4VDT4 40-49 years, female 0.6
GTEX-139T6-0226-SM-5IFGZ 50-59 years, male 0.5
GTEX-145MN-0126-SM-5RQHY 30-39 years, male 0.5
GTEX-OOBJ-0926-SM-48TDO 60-69 years, male 0.5
GTEX-P4QS-0926-SM-48TBS 60-69 years, male 0.5
GTEX-Q734-0226-SM-48U1A 40-49 years, female 0.5
GTEX-QCQG-0226-SM-48U28 50-59 years, female 0.5
GTEX-QDVN-0526-SM-48TZ4 50-59 years, male 0.5
GTEX-U3ZH-0126-SM-4DXUK 30-39 years, male 0.5
GTEX-UPK5-1626-SM-4JBHI 40-49 years, male 0.5
GTEX-W5WG-0626-SM-4SOID 50-59 years, female 0.5
GTEX-X3Y1-0126-SM-4PQZA 40-49 years, male 0.5
GTEX-YB5E-0426-SM-5IFHR 40-49 years, male 0.5
GTEX-YFCO-0926-SM-5LUA5 40-49 years, male 0.5
GTEX-1122O-0526-SM-5N9DM 60-69 years, female 0.4
GTEX-12BJ1-0726-SM-5EGGF 60-69 years, male 0.4
GTEX-1399R-0226-SM-5IJGG 30-39 years, male 0.4
GTEX-13FH7-1326-SM-5IFG8 50-59 years, female 0.4
GTEX-13N11-0126-SM-5KM2Z 50-59 years, female 0.4
GTEX-13VXT-1326-SM-5LU3Y 20-29 years, female 0.4
GTEX-146FR-1926-SM-5NQA6 60-69 years, female 0.4
GTEX-PW2O-0126-SM-48TC8 20-29 years, male 0.4
GTEX-S3XE-0626-SM-4AD6B 50-59 years, male 0.4
GTEX-XXEK-0126-SM-4BRVU 50-59 years, male 0.4
GTEX-ZLFU-0526-SM-4WWBN 40-49 years, male 0.4
GTEX-ZLWG-0426-SM-4WWFA 50-59 years, female 0.4
GTEX-ZVZP-0726-SM-59HKA 50-59 years, male 0.4
GTEX-1211K-0426-SM-5FQTP 60-69 years, female 0.3
GTEX-13CF3-0226-SM-5J1NW 60-69 years, female 0.3
GTEX-13PL7-1126-SM-5MR5O 60-69 years, female 0.3
GTEX-13PVR-0326-SM-5RQJY 60-69 years, female 0.3
GTEX-QV44-0126-SM-4R1KH 50-59 years, male 0.3
GTEX-R55G-0226-SM-48FEI 40-49 years, female 0.3
GTEX-XQ8I-1726-SM-4BOQB 50-59 years, male 0.3
GTEX-XUJ4-0226-SM-4BOP8 60-69 years, female 0.3
GTEX-OIZH-0926-SM-48TBR 50-59 years, male 0.2
GTEX-Q2AH-0226-SM-48U1I 40-49 years, male 0.2
GTEX-RUSQ-0126-SM-47JWV 50-59 years, male 0.2
GTEX-XV7Q-0126-SM-4BRVK 40-49 years, female 0.2
GTEX-Y114-0726-SM-4TT6U 50-59 years, female 0.2
GTEX-117YX-2126-SM-5GIEL 50-59 years, male 0.1
GTEX-12WSK-0126-SM-5GCO7 40-49 years, female 0.1
Show all

SPLEEN - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

10.3

FANTOM5 sample id

Sample description

Tags Per Million

Spleen
Tags Per Million: 10.3
FF:10025-101D7 39,50,70 years, male 10.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.