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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:151.8TPM
GTEx:261.3RPKM
FANTOM5:105.1Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA019006

 

Antibody HPA020595

 

Glandular cells

Medium   Not detected  
   
   
   

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

151.8

overview Male, age 62 Sample 1
TPM: 123.4
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65 Sample 2
TPM: 185.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65 Sample 3
TPM: 157
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68 Sample 4
TPM: 170.5
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60 Sample 5
TPM: 151.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66 Sample 6
TPM: 204.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63 Sample 7
TPM: 178.6
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66 Sample 8
TPM: 138.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58 Sample 9
TPM: 113.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

261.3

GTEx sample id

Sample description

RPKM

Prostate
RPKM: 261.3
Samples: 106

Max RPKM: 502.3
Min RPKM: 105.0
Std RPKM: 83.1
Median RPKM: 240.7
GTEX-WH7G-1726-SM-4LVKY 40-49 years, male 502.3
GTEX-WFG8-1826-SM-4LVM4 20-29 years, male 460.7
GTEX-145LT-0626-SM-5O99E 40-49 years, male 442.5
GTEX-ZY6K-1526-SM-5GZXE 50-59 years, male 441.3
GTEX-ZZ64-0926-SM-5E44L 20-29 years, male 431.1
GTEX-XOTO-2826-SM-4B65I 50-59 years, male 430.9
GTEX-11WQK-2726-SM-5EQMU 50-59 years, male 424.1
GTEX-13O61-1726-SM-5KM46 60-69 years, male 411.8
GTEX-U4B1-1426-SM-4DXTX 40-49 years, male 395.1
GTEX-145LV-1226-SM-5S2QH 50-59 years, male 383.5
GTEX-WOFM-0326-SM-4OOSL 20-29 years, male 369.2
GTEX-PLZ6-1126-SM-3P5ZR 30-39 years, male 366.6
GTEX-U412-2026-SM-4DXSI 60-69 years, male 362.8
GTEX-132NY-2826-SM-5P9G2 60-69 years, male 359.0
GTEX-Y8E4-2126-SM-5RQHO 40-49 years, male 356.3
GTEX-OIZH-2026-SM-3NB1M 50-59 years, male 351.7
GTEX-SNMC-0926-SM-4DM5U 20-29 years, male 348.4
GTEX-XQ3S-2526-SM-4BOOG 20-29 years, male 343.5
GTEX-S33H-1826-SM-4AD65 30-39 years, male 338.5
GTEX-UTHO-2726-SM-4JBH9 60-69 years, male 333.9
GTEX-11P82-1126-SM-5BC5K 20-29 years, male 332.6
GTEX-S4Q7-1026-SM-4AD75 20-29 years, male 332.1
GTEX-RWSA-2026-SM-47JX8 40-49 years, male 331.3
GTEX-YF7O-1926-SM-4W1YQ 50-59 years, male 330.9
GTEX-WZTO-0926-SM-4PQZ3 40-49 years, male 329.9
GTEX-XMK1-1026-SM-4B65H 40-49 years, male 326.4
GTEX-V1D1-1926-SM-4JBGX 50-59 years, male 317.2
GTEX-X5EB-1826-SM-4E3K8 40-49 years, male 316.2
GTEX-S95S-1026-SM-4B64M 60-69 years, male 312.6
GTEX-NPJ8-2426-SM-3MJHL 40-49 years, male 310.7
GTEX-Q2AI-1126-SM-48U19 40-49 years, male 310.5
GTEX-12C56-1326-SM-5FQSV 20-29 years, male 296.5
GTEX-YB5E-1826-SM-5IFI4 40-49 years, male 288.7
GTEX-SJXC-2026-SM-4DM6N 60-69 years, male 281.0
GTEX-11TUW-2126-SM-5GU7B 60-69 years, male 276.6
GTEX-132QS-1126-SM-5P9GC 60-69 years, male 276.0
GTEX-146FQ-1726-SM-5QGPX 30-39 years, male 274.6
GTEX-11DYG-2526-SM-5N9BB 60-69 years, male 271.8
GTEX-139T6-1526-SM-5P9G6 50-59 years, male 271.2
GTEX-QEG4-2226-SM-4R1JM 30-39 years, male 268.0
GTEX-ZTX8-1026-SM-5EGHD 20-29 years, male 267.6
GTEX-13FTW-1226-SM-5LZZ1 40-49 years, male 266.7
GTEX-144GM-0826-SM-5O98R 20-29 years, male 265.8
GTEX-YJ8A-1126-SM-5IFJU 20-29 years, male 265.0
GTEX-SNOS-1026-SM-4DM4Y 40-49 years, male 260.2
GTEX-ZTTD-2726-SM-57WFA 50-59 years, male 258.3
GTEX-ZPU1-2026-SM-57WFI 40-49 years, male 257.9
GTEX-RM2N-1126-SM-48FCY 50-59 years, male 257.8
GTEX-13FHO-2826-SM-5K7ZA 60-69 years, male 255.8
GTEX-111FC-2026-SM-5GZYO 60-69 years, male 252.9
GTEX-Y9LG-1826-SM-4VBQC 30-39 years, male 252.7
GTEX-148VJ-1826-SM-5Q5DV 70-79 years, male 247.2
GTEX-ZUA1-2826-SM-59HLE 40-49 years, male 241.7
GTEX-111CU-1526-SM-5N9FS 50-59 years, male 239.7
GTEX-NFK9-2226-SM-3MJGP 40-49 years, male 239.6
GTEX-QV44-1526-SM-4R1KI 50-59 years, male 239.5
GTEX-11O72-2726-SM-5HL6K 40-49 years, male 237.9
GTEX-T8EM-1826-SM-4DM7F 40-49 years, male 237.8
GTEX-11ZUS-2126-SM-5N9E6 30-39 years, male 237.5
GTEX-11NSD-0826-SM-5986S 20-29 years, male 237.2
GTEX-111YS-1726-SM-5GIED 60-69 years, male 236.8
GTEX-U3ZM-0926-SM-4DXSW 40-49 years, male 235.0
GTEX-13OW8-0426-SM-5J2NR 60-69 years, male 234.7
GTEX-13NYS-1026-SM-5KLZT 60-69 years, male 233.6
GTEX-ZT9W-1626-SM-4YCDQ 50-59 years, male 232.7
GTEX-11TT1-2026-SM-5EQM8 20-29 years, male 232.4
GTEX-XAJ8-0626-SM-47JY4 40-49 years, male 232.0
GTEX-REY6-2126-SM-48FD9 60-69 years, male 230.6
GTEX-14BMV-2326-SM-5RQJ4 50-59 years, male 227.9
GTEX-13O21-1126-SM-5N9EV 50-59 years, male 226.0
GTEX-14ABY-0726-SM-5Q5DF 50-59 years, male 221.0
GTEX-1399R-0526-SM-5IJEF 30-39 years, male 220.0
GTEX-WFON-1626-SM-4LVMV 40-49 years, male 219.0
GTEX-QV31-1026-SM-4R1K3 30-39 years, male 218.3
GTEX-13G51-2326-SM-5LZXV 60-69 years, male 216.7
GTEX-QMRM-1426-SM-4R1K8 50-59 years, male 214.1
GTEX-WFG7-1826-SM-3GIL1 20-29 years, male 212.1
GTEX-V955-1826-SM-4JBIL 60-69 years, male 207.9
GTEX-117YX-1526-SM-5H12T 50-59 years, male 207.2
GTEX-QLQ7-1326-SM-4R1JY 60-69 years, male 205.2
GTEX-ZLFU-1726-SM-4WWBU 40-49 years, male 201.5
GTEX-11OF3-1726-SM-5GU5Q 60-69 years, male 201.0
GTEX-S3XE-1326-SM-4AD4H 50-59 years, male 199.2
GTEX-13FXS-2826-SM-5LZYC 50-59 years, male 198.8
GTEX-OOBJ-2026-SM-3NB1R 60-69 years, male 196.5
GTEX-1399T-1226-SM-5P9J5 60-69 years, male 193.7
GTEX-XPVG-2026-SM-4B65E 50-59 years, male 192.1
GTEX-U8XE-2526-SM-4E3IT 30-39 years, male 192.0
GTEX-117YW-1426-SM-5EGGO 50-59 years, male 189.5
GTEX-131XF-1926-SM-5DUW4 60-69 years, male 184.2
GTEX-ZDYS-1226-SM-5IJF3 50-59 years, male 182.9
GTEX-11EQ9-1726-SM-5HL6U 30-39 years, male 182.0
GTEX-XGQ4-1826-SM-4AT6F 50-59 years, male 173.9
GTEX-11P7K-0626-SM-5985Z 30-39 years, male 168.9
GTEX-14E6E-1126-SM-5S2R4 30-39 years, male 168.8
GTEX-13N2G-1826-SM-5KM1I 60-69 years, male 167.5
GTEX-WK11-2626-SM-4OOSK 50-59 years, male 165.7
GTEX-ZVP2-0826-SM-59HJ6 50-59 years, male 160.8
GTEX-12ZZZ-2026-SM-5LZWJ 60-69 years, male 156.4
GTEX-13RTJ-2126-SM-5S2PZ 60-69 years, male 135.2
GTEX-OOBK-2025-SM-3LK5S 40-49 years, male 125.1
GTEX-14C5O-2826-SM-5RQI6 60-69 years, male 123.7
GTEX-12696-2226-SM-5EQ65 60-69 years, male 118.6
GTEX-13111-1326-SM-5GCNO 50-59 years, male 116.3
GTEX-12BJ1-1226-SM-5LUAE 60-69 years, male 108.6
GTEX-VJYA-1226-SM-3GIJ6 60-69 years, male 105.0
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

105.1

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 105.1
FF:10022-101D4 73,79,93 years, male 105.1

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