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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:9.3TPM
GTEx:12.4RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA006554

 

Glandular cells

Not detected  
 
 

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA006554

 

Glandular cells

Not detected  
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

9.3

overview Female, age 33 Sample 1
TPM: 9.6
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 14.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 2.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 10.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

12.4

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 12.4
Samples: 193

Max RPKM: 53.3
Min RPKM: 3.1
Std RPKM: 6.6
Median RPKM: 10.7
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 53.3
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 43.5
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 36.5
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 35.0
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 32.3
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 28.7
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 27.2
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 26.6
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 24.5
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 24.0
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 23.7
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 23.3
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 23.1
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 23.0
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 21.8
GTEX-12C56-0526-SM-5FQST 20-29 years, male 21.1
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 20.4
GTEX-13111-1226-SM-5GCNC 50-59 years, male 20.2
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 20.2
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 20.0
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 19.2
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 19.2
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 19.2
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 18.9
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 18.9
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 18.7
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 18.4
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 18.2
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 18.1
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 17.5
GTEX-Y114-1226-SM-4TT88 50-59 years, female 17.5
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 16.6
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 16.2
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 15.9
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 15.7
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 15.5
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 15.0
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 14.8
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 14.7
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 14.7
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 14.4
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 14.3
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 14.2
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 14.2
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 14.2
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 14.0
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 13.9
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 13.8
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 13.8
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 13.7
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 13.6
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 13.6
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 13.4
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 13.4
GTEX-V955-1326-SM-4JBHR 60-69 years, male 13.4
GTEX-PX3G-1526-SM-48U11 20-29 years, female 13.2
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 13.2
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 13.1
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 13.1
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 13.1
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 12.7
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 12.5
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 12.4
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 12.1
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 12.1
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 12.1
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 12.1
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 11.9
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 11.9
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 11.8
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 11.8
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 11.7
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 11.7
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 11.6
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 11.6
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 11.6
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 11.6
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 11.5
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 11.4
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 11.3
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 11.3
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 11.3
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 11.3
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 11.3
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 11.3
GTEX-13113-0726-SM-5LZUF 60-69 years, female 11.1
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 11.1
GTEX-S95S-0826-SM-4B64N 60-69 years, male 11.1
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 11.1
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 10.9
GTEX-R53T-1226-SM-48FCT 50-59 years, female 10.9
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 10.8
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 10.8
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 10.7
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 10.7
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 10.7
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 10.7
GTEX-12696-1726-SM-5EQLH 60-69 years, male 10.6
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 10.6
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 10.6
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 10.5
GTEX-144GN-1226-SM-5O991 50-59 years, male 10.4
GTEX-R55G-1126-SM-48FDG 40-49 years, female 10.4
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 10.4
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 10.3
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 10.3
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 10.2
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 10.2
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 10.2
GTEX-S341-0626-SM-4AD5T 40-49 years, female 10.2
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 10.2
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 10.1
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 10.0
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 10.0
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 10.0
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 10.0
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 9.9
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 9.9
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 9.9
GTEX-R55C-1026-SM-48FCM 40-49 years, male 9.8
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 9.8
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 9.8
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 9.7
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 9.6
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 9.6
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 9.6
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 9.5
GTEX-Q734-1026-SM-48U16 40-49 years, female 9.5
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 9.4
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 9.4
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 9.4
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 9.3
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 9.3
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 9.3
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 9.2
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 9.1
GTEX-QLQW-0726-SM-447AA 30-39 years, male 9.1
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 9.0
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 9.0
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 8.9
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 8.9
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 8.9
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 8.8
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 8.8
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 8.7
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 8.7
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 8.7
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 8.6
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 8.4
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 8.4
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 8.4
GTEX-QV31-0626-SM-447C5 30-39 years, male 8.4
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 8.4
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 8.3
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 8.3
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 8.2
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 8.1
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 8.1
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 8.1
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 8.0
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 8.0
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 8.0
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 8.0
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 8.0
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 8.0
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 7.9
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 7.8
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 7.6
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 7.6
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 7.5
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 7.5
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 7.4
GTEX-QMRM-1126-SM-447BN 50-59 years, male 7.3
GTEX-117YX-1026-SM-5H11V 50-59 years, male 7.1
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 6.9
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 6.9
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 6.8
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 6.4
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 6.1
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 6.0
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 5.6
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 5.6
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 5.4
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 4.8
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 4.8
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 4.7
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 4.7
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 4.4
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 4.4
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 3.7
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 3.4
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 3.2
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 3.1
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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