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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:10.9TPM
GTEx:18.2RPKM
FANTOM5:21.4Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Low
Glandular cells:Medium
Myoepithelial cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA044341

 

Antibody CAB026388

 

Adipocytes

Not detected   Not detected  

Glandular cells

Medium   Medium  

Myoepithelial cells

Medium   Medium  
   
   
   

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

10.9

overview Female, age 52 Sample 1
TPM: 13.6
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 15.3
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 11.4
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 3.5
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

18.2

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 18.2
Samples: 214

Max RPKM: 32.3
Min RPKM: 6.8
Std RPKM: 5.5
Median RPKM: 18.0
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 32.3
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 31.9
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 31.1
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 30.6
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 30.2
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 29.9
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 28.9
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 28.7
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 28.3
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 28.3
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 28.1
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 27.7
GTEX-XBED-1626-SM-47JYN 60-69 years, male 27.7
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 26.8
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 26.8
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 26.7
GTEX-RU72-0626-SM-46MUI 50-59 years, female 26.6
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 26.5
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 26.0
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 26.0
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 25.9
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 25.8
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 25.7
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 25.4
GTEX-11EI6-0626-SM-5985T 60-69 years, male 25.3
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 25.3
GTEX-S341-1526-SM-4AD6K 40-49 years, female 25.1
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 25.1
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 25.1
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 25.0
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 24.9
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 24.6
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 24.4
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 24.4
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 24.3
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 24.3
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 24.2
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 24.1
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 23.8
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 23.8
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 23.7
GTEX-QVJO-1826-SM-447C9 60-69 years, female 23.6
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 23.6
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 23.4
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 23.3
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 23.2
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 23.2
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 22.9
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 22.6
GTEX-1192X-2326-SM-5987X 50-59 years, male 22.5
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 22.3
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 22.0
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 22.0
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 21.9
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 21.9
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 21.8
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 21.8
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 21.8
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 21.7
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 21.6
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 21.4
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 21.4
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 21.3
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 21.2
GTEX-111YS-1926-SM-5GICC 60-69 years, male 21.1
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 20.9
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 20.8
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 20.6
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 20.6
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 20.5
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 20.5
GTEX-T6MN-0726-SM-32PML 50-59 years, male 20.4
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 20.3
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 20.2
GTEX-QEL4-2126-SM-447AE 50-59 years, male 20.1
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 20.1
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 19.9
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 19.9
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 19.8
GTEX-1122O-1226-SM-5H113 60-69 years, female 19.8
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 19.5
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 19.5
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 19.4
GTEX-TML8-1226-SM-32QON 40-49 years, female 19.4
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 19.3
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 19.3
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 19.3
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 19.2
GTEX-X261-0626-SM-3NMD9 50-59 years, male 19.1
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 19.1
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 19.1
GTEX-117XS-1926-SM-5GICO 60-69 years, male 19.0
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 19.0
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 18.8
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 18.7
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 18.7
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 18.7
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 18.6
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 18.5
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 18.5
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 18.4
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 18.4
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 18.3
GTEX-13113-1726-SM-5GCOO 60-69 years, female 18.2
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 18.2
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 18.2
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 18.0
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 18.0
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 17.9
GTEX-144GM-0926-SM-5O994 20-29 years, male 17.9
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 17.8
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 17.8
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 17.8
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 17.7
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 17.7
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 17.6
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 17.4
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 17.2
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 17.2
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 17.2
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 17.2
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 17.1
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 17.1
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 17.0
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 17.0
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 16.6
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 16.6
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 16.5
GTEX-11P81-1926-SM-5BC53 30-39 years, female 16.4
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 16.4
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 16.3
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 16.2
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 16.1
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 16.1
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 16.1
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 16.1
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 16.0
GTEX-R53T-1526-SM-48FEK 50-59 years, female 16.0
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 15.8
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 15.8
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 15.5
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 15.5
GTEX-11OF3-1926-SM-59889 60-69 years, male 15.4
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 15.0
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 15.0
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 15.0
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 14.9
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 14.9
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 14.8
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 14.8
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 14.8
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 14.6
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 14.5
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 14.3
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 14.2
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 14.1
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 14.1
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 13.8
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 13.7
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 13.7
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 13.6
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 13.6
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 13.5
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 13.5
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 13.4
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 13.3
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 13.2
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 13.2
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 13.0
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 13.0
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 12.9
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 12.9
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 12.9
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 12.9
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 12.8
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 12.5
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 12.4
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 12.4
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 12.4
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 12.4
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 12.3
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 12.2
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 12.1
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 12.0
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 12.0
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 11.8
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 11.7
GTEX-R55D-0826-SM-48FEA 50-59 years, male 11.7
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 11.6
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 11.5
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 11.5
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 11.3
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 10.8
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 10.7
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 10.6
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 10.6
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 10.5
GTEX-REY6-2426-SM-48FF5 60-69 years, male 10.2
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 10.1
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 10.1
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 10.0
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 9.7
GTEX-117YX-1426-SM-5H12H 50-59 years, male 9.6
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 9.6
GTEX-WFON-1826-SM-3GILG 40-49 years, male 9.4
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 9.4
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 9.2
GTEX-14753-2426-SM-5LU8U 60-69 years, male 9.1
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 8.9
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 8.5
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 7.8
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 7.6
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 7.1
GTEX-11P82-1326-SM-5HL62 20-29 years, male 6.8
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

21.4

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 21.4
FF:10080-102A8 77 years, female 21.4

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