We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
AACS
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:11.1TPM
GTEx:2.5RPKM
FANTOM5:24.3Tags Per Million

SMALL INTESTINE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA058815

 

Glandular cells

High  
 
 

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

11.1

overview Male, age 65 Sample 1
TPM: 9.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 12.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 11.1
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 10.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

2.5

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 2.5
Samples: 88

Max RPKM: 5.3
Min RPKM: 1.1
Std RPKM: 0.7
Median RPKM: 2.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 5.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 4.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 3.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 3.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 3.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 3.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2.7
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 2.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.3
GTEX-1192X-2526-SM-59868 50-59 years, male 1.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1.1
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

24.3

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 24.3
FF:10024-101D6 15,40,85 years, mixed 24.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.