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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:18.4TPM
GTEx:25.6RPKM
FANTOM5:27.3Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Ovarian stroma cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040086

 

Ovarian stroma cells

Medium  
 
 

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

18.4

overview Female, age 64 Sample 1
TPM: 17.3
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52 Sample 2
TPM: 18.6
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80 Sample 3
TPM: 19.2
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

25.6

GTEx sample id

Sample description

RPKM

Ovary
RPKM: 25.6
Samples: 97

Max RPKM: 43.1
Min RPKM: 11.4
Std RPKM: 6.3
Median RPKM: 24.5
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 43.1
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 42.5
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 41.1
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 37.6
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 37.4
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 37.0
GTEX-QVJO-3126-SM-4R1KC 60-69 years, female 36.7
GTEX-12WSB-2226-SM-5GCOS 60-69 years, female 35.7
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 35.7
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 34.9
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 34.1
GTEX-Q734-0726-SM-48TZP 40-49 years, female 33.7
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 33.3
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 33.2
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 33.1
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 32.9
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 32.3
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 31.8
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 31.4
GTEX-P78B-1926-SM-3P616 40-49 years, female 31.0
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 30.8
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 30.2
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 29.9
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 29.9
GTEX-ZYWO-1926-SM-5E456 40-49 years, female 29.2
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 28.7
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 28.7
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 27.9
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 27.5
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 27.2
GTEX-RU72-2226-SM-46MUE 50-59 years, female 27.1
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 27.1
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 27.1
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 27.0
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 27.0
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 26.9
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 26.9
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 26.6
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 26.1
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 26.0
GTEX-S32W-1226-SM-4AD67 50-59 years, female 25.9
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 25.9
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 25.8
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 25.7
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 25.6
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 25.3
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 24.7
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 24.5
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 24.5
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 24.5
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 24.4
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 24.1
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 23.9
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 23.7
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 23.6
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 23.5
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 23.4
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 23.3
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 23.1
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 23.1
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 22.7
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 22.6
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 22.5
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 22.4
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 22.3
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 22.0
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 21.9
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 21.6
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 21.6
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 21.5
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 21.3
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 21.2
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 20.9
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 20.8
GTEX-S341-0726-SM-4AD5R 40-49 years, female 20.8
GTEX-XUJ4-1326-SM-4BOQ9 60-69 years, female 20.8
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 20.7
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 20.6
GTEX-QCQG-1426-SM-48U22 50-59 years, female 20.5
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 20.4
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 20.4
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 20.3
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 19.6
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 19.5
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 19.5
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 19.4
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 19.4
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 18.9
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 18.6
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 18.0
GTEX-11I78-1926-SM-59878 50-59 years, female 17.4
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 17.2
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 16.4
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 15.1
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 13.9
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 13.0
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 11.4
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

27.3

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 27.3
FF:10020-101D2 47,75,84 years, female 27.3

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The Human Protein Atlas project is funded
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