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TISSUE ATLAS PRIMARY DATA SPLEEN

GENE/PROTEIN

Antibody validation


Dictionary

Spleen

Tissue proteome

Spleen

SPLEEN - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:19.3TPM
GTEx:26.1RPKM
FANTOM5:29.7Tags Per Million

SPLEEN - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in red pulp:Medium
Cells in white pulp:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040086

 

Cells in red pulp

Medium  

Cells in white pulp

High  
 
 
 

SPLEEN - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

19.3

overview Female, age 60 Sample 1
TPM: 21.9
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Male, age 17 Sample 2
TPM: 19.5
Cell types%
Lymphocytes: 40
Macrophages: 35
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 5
overview Male, age 20 Sample 3
TPM: 20
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Female, age 19 Sample 4
TPM: 19.3
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 65 Sample 5
TPM: 16
Cell types%
Lymphocytes: 35
Macrophages: 30
Endothelial cells: 20
Fibroblasts: 10
Other cell types: 5

SPLEEN - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.1

GTEx sample id

Sample description

RPKM

Spleen
RPKM: 26.1
Samples: 104

Max RPKM: 36.4
Min RPKM: 13.3
Std RPKM: 4.1
Median RPKM: 25.9
GTEX-11NSD-0426-SM-5N9CR 20-29 years, male 36.4
GTEX-UPK5-1626-SM-4JBHI 40-49 years, male 35.8
GTEX-117YX-2126-SM-5GIEL 50-59 years, male 34.1
GTEX-U3ZH-0126-SM-4DXUK 30-39 years, male 34.1
GTEX-Q2AH-0226-SM-48U1I 40-49 years, male 34.0
GTEX-QV31-0126-SM-447BP 30-39 years, male 33.0
GTEX-OOBJ-0926-SM-48TDO 60-69 years, male 32.7
GTEX-1399R-0226-SM-5IJGG 30-39 years, male 32.1
GTEX-XQ8I-1726-SM-4BOQB 50-59 years, male 31.6
GTEX-Y3I4-0126-SM-4TT26 50-59 years, male 31.1
GTEX-QLQW-0126-SM-447BK 30-39 years, male 31.0
GTEX-P4QS-0926-SM-48TBS 60-69 years, male 30.6
GTEX-W5WG-0626-SM-4SOID 50-59 years, female 30.6
GTEX-13VXT-1326-SM-5LU3Y 20-29 years, female 30.5
GTEX-12WSJ-0526-SM-5GCOZ 40-49 years, female 30.4
GTEX-13N11-0126-SM-5KM2Z 50-59 years, female 30.4
GTEX-PX3G-0926-SM-48U12 20-29 years, female 30.2
GTEX-WHWD-0126-SM-4OORS 50-59 years, male 30.2
GTEX-R55G-0226-SM-48FEI 40-49 years, female 30.1
GTEX-X3Y1-0126-SM-4PQZA 40-49 years, male 30.1
GTEX-RUSQ-0126-SM-47JWV 50-59 years, male 30.0
GTEX-XXEK-0126-SM-4BRVU 50-59 years, male 30.0
GTEX-Q734-0226-SM-48U1A 40-49 years, female 29.7
GTEX-O5YT-0926-SM-48TDG 20-29 years, male 29.4
GTEX-QV44-0126-SM-4R1KH 50-59 years, male 29.3
GTEX-Y3IK-0126-SM-4WWE9 50-59 years, female 29.3
GTEX-11LCK-0126-SM-5A5M5 30-39 years, male 29.0
GTEX-ZYWO-0226-SM-5GZX3 40-49 years, female 29.0
GTEX-146FQ-0626-SM-5LU9U 30-39 years, male 28.8
GTEX-XGQ4-0126-SM-4AT4H 50-59 years, male 28.8
GTEX-145MN-0126-SM-5RQHY 30-39 years, male 28.6
GTEX-QCQG-0226-SM-48U28 50-59 years, female 28.6
GTEX-131XE-1126-SM-5EGHW 50-59 years, male 28.5
GTEX-OIZH-0926-SM-48TBR 50-59 years, male 28.4
GTEX-QDVN-0526-SM-48TZ4 50-59 years, male 28.2
GTEX-PLZ6-0126-SM-48TC6 30-39 years, male 28.0
GTEX-Z9EW-0726-SM-5HL9H 40-49 years, male 28.0
GTEX-XUJ4-0226-SM-4BOP8 60-69 years, female 27.7
GTEX-144GN-2126-SM-5O99D 50-59 years, male 27.5
GTEX-XMK1-0126-SM-4B65F 40-49 years, male 27.2
GTEX-13U4I-1626-SM-5IFFR 40-49 years, female 27.1
GTEX-Y8LW-0126-SM-4VBS1 50-59 years, female 27.1
GTEX-11XUK-0426-SM-5EQML 40-49 years, female 27.0
GTEX-S3XE-0626-SM-4AD6B 50-59 years, male 27.0
GTEX-WFON-0126-SM-4LVM9 40-49 years, male 27.0
GTEX-X585-1826-SM-4QAS3 50-59 years, male 27.0
GTEX-12WSN-0126-SM-5DUX5 40-49 years, male 26.9
GTEX-X4LF-0226-SM-4QAS8 50-59 years, male 26.9
GTEX-ZAB5-0526-SM-5CVMU 50-59 years, male 26.3
GTEX-14E6E-1226-SM-5S2R5 30-39 years, male 26.2
GTEX-ZDTT-1026-SM-5KM19 60-69 years, male 26.1
GTEX-YB5K-1926-SM-4VDT4 40-49 years, female 26.0
GTEX-PW2O-0126-SM-48TC8 20-29 years, male 25.8
GTEX-YB5E-0426-SM-5IFHR 40-49 years, male 25.8
GTEX-U3ZN-0126-SM-4DXUM 30-39 years, female 25.4
GTEX-11DXX-0726-SM-5H12X 60-69 years, female 25.1
GTEX-14DAR-0326-SM-5S2PS 50-59 years, male 25.0
GTEX-ZLFU-0526-SM-4WWBN 40-49 years, male 24.9
GTEX-146FR-1926-SM-5NQA6 60-69 years, female 24.8
GTEX-147F3-0126-SM-5NQBJ 50-59 years, female 24.8
GTEX-13FH7-1326-SM-5IFG8 50-59 years, female 24.7
GTEX-S4Z8-0226-SM-4AD5K 60-69 years, male 24.4
GTEX-T5JW-0126-SM-4DM6K 20-29 years, female 24.3
GTEX-U4B1-0526-SM-4DXTK 40-49 years, male 24.3
GTEX-ZYFG-0726-SM-5GIDX 60-69 years, female 24.3
GTEX-13PVR-0326-SM-5RQJY 60-69 years, female 24.1
GTEX-XPVG-0626-SM-4B65B 50-59 years, male 24.1
GTEX-YEC4-0126-SM-4W21T 40-49 years, male 23.9
GTEX-ZP4G-0326-SM-4YCEF 20-29 years, female 23.9
GTEX-POMQ-0126-SM-48TD6 20-29 years, female 23.8
GTEX-1122O-0526-SM-5N9DM 60-69 years, female 23.7
GTEX-11P81-1326-SM-5GU5S 30-39 years, female 23.7
GTEX-11VI4-0126-SM-5GU6Z 40-49 years, female 23.7
GTEX-13CF3-0226-SM-5J1NW 60-69 years, female 23.7
GTEX-UJHI-0126-SM-4IHLP 50-59 years, female 23.7
GTEX-13111-0126-SM-5EGHO 50-59 years, male 23.6
GTEX-13X6H-0726-SM-5Q5BX 50-59 years, female 23.6
GTEX-XV7Q-0126-SM-4BRVK 40-49 years, female 23.6
GTEX-QMRM-0226-SM-4R1K7 50-59 years, male 23.5
GTEX-ZPU1-1026-SM-4YCEQ 40-49 years, male 23.5
GTEX-VJYA-0126-SM-4KL1P 60-69 years, male 23.4
GTEX-1211K-0426-SM-5FQTP 60-69 years, female 23.1
GTEX-1399S-0226-SM-5IFFG 30-39 years, female 23.0
GTEX-13PL7-1126-SM-5MR5O 60-69 years, female 22.8
GTEX-XAJ8-0126-SM-47JYG 40-49 years, male 22.4
GTEX-YFCO-0926-SM-5LUA5 40-49 years, male 22.4
GTEX-12WSK-0126-SM-5GCO7 40-49 years, female 22.3
GTEX-12WSG-0926-SM-5EGIH 50-59 years, female 22.2
GTEX-ZVP2-0526-SM-51MSC 50-59 years, male 22.0
GTEX-ZV6S-0826-SM-5NQ6Z 40-49 years, female 21.8
GTEX-ZLWG-0426-SM-4WWFA 50-59 years, female 21.7
GTEX-Y5LM-0326-SM-4VBRN 40-49 years, female 21.6
GTEX-12BJ1-0726-SM-5EGGF 60-69 years, male 21.4
GTEX-131XG-0426-SM-5IFGD 50-59 years, female 21.1
GTEX-13S86-0126-SM-5S2PI 40-49 years, male 21.1
GTEX-139YR-0426-SM-5IFFV 50-59 years, male 20.7
GTEX-ZVZP-0726-SM-59HKA 50-59 years, male 20.7
GTEX-132QS-0226-SM-5IFFZ 60-69 years, male 20.1
GTEX-11EQ9-0426-SM-5A5JY 30-39 years, male 19.0
GTEX-139T6-0226-SM-5IFGZ 50-59 years, male 19.0
GTEX-11P7K-0426-SM-5BC5H 30-39 years, male 18.9
GTEX-Y114-0726-SM-4TT6U 50-59 years, female 17.7
GTEX-ZZPU-0126-SM-5E446 50-59 years, female 17.5
GTEX-P4PP-0926-SM-48TBZ 30-39 years, female 13.3
Show all

SPLEEN - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

29.7

FANTOM5 sample id

Sample description

Tags Per Million

Spleen
Tags Per Million: 29.7
FF:10025-101D7 39,50,70 years, male 29.7

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The Human Protein Atlas project is funded
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