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TISSUE ATLAS PRIMARY DATA HIPPOCAMPUS

GENE/PROTEIN

Antibody validation


Dictionary

Hippocampus

HIPPOCAMPUS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

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GTEx:47.0RPKM
FANTOM5:196.2Tags Per Million

HIPPOCAMPUS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA001097

 

Glial cells

High  

Neuronal cells

High  
 
 
 

HIPPOCAMPUS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

47.0

GTEx sample id

Sample description

RPKM

Brain - Hippocampus
RPKM: 47.0
Samples: 94

Max RPKM: 96.6
Min RPKM: 13.2
Std RPKM: 18.8
Median RPKM: 48.0
GTEX-RNOR-0011-R1A-SM-5SI8F 50-59 years, female 96.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 89.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 87.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 86.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 78.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 78.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 73.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 72.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 71.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 69.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 68.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 68.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 68.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 68.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 67.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 65.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 65.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 64.5
GTEX-XOTO-0011-R1B-SM-4B65C 50-59 years, male 64.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 63.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 62.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 62.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 59.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 58.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 58.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 58.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 58.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 56.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 56.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 56.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 55.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 55.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 54.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 54.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 54.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 53.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 53.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 52.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 52.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 51.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 51.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 50.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 49.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 49.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 49.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 48.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 48.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 47.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 47.4
GTEX-N7MT-0011-R1a-SM-5SI7S 60-69 years, female 46.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 44.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 44.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 43.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 41.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 41.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 41.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 40.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 40.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 39.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 38.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 37.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 36.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 36.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 36.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 35.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 35.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 35.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 34.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 32.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 32.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 32.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 31.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 31.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 30.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 28.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 28.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 27.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 27.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 26.8
GTEX-12WSB-0011-R1b-SM-5P9EY 60-69 years, female 25.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 25.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 25.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 24.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 24.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 23.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 20.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 20.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 20.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 20.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 16.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 14.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 14.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 13.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 13.2
Show all

HIPPOCAMPUS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

196.2

FANTOM5 sample id

Sample description

Tags Per Million

Hippocampus
Tags Per Million: 230.6
FF:10153-102I9 76 years, female 253.0
FF:10169-103B7 60 years, female 208.1

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The Human Protein Atlas project is funded
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