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ABCC1
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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:5.4TPM
GTEx:11.4RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002380

 

Glandular cells

Not detected  
 
 
 

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002380

 

Glandular cells

Not detected  
 
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

5.4

overview Female, age 33 Sample 1
TPM: 3
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 9.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 8.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 0.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

11.4

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 11.4
Samples: 193

Max RPKM: 23.7
Min RPKM: 5.4
Std RPKM: 3.5
Median RPKM: 10.9
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 23.7
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 20.8
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 19.9
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 19.8
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 19.6
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 19.5
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 19.5
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 19.5
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 19.5
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 19.3
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 18.8
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 18.8
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 18.8
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 18.7
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 17.7
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 17.3
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 17.1
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 17.1
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 17.0
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 16.7
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 16.7
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 16.6
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 16.4
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 16.4
GTEX-R55G-1126-SM-48FDG 40-49 years, female 16.2
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 15.8
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 15.7
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 15.7
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 15.6
GTEX-R55C-1026-SM-48FCM 40-49 years, male 15.5
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 15.2
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 15.2
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 15.1
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 14.7
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 14.3
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 14.0
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 13.9
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 13.8
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 13.7
GTEX-Y114-1226-SM-4TT88 50-59 years, female 13.6
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 13.5
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 13.5
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 13.5
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 13.5
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 13.3
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 13.3
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 13.3
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 13.2
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 13.0
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 13.0
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 12.9
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 12.9
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 12.9
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 12.8
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 12.6
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 12.6
GTEX-117YX-1026-SM-5H11V 50-59 years, male 12.5
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 12.4
GTEX-S341-0626-SM-4AD5T 40-49 years, female 12.4
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 12.3
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 12.3
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 12.2
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 12.2
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 12.2
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 12.2
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 12.1
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 12.1
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 12.0
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 12.0
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 11.9
GTEX-144GN-1226-SM-5O991 50-59 years, male 11.8
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 11.8
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 11.8
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 11.8
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 11.8
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 11.7
GTEX-12C56-0526-SM-5FQST 20-29 years, male 11.7
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 11.5
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 11.5
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 11.5
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 11.4
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 11.4
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 11.4
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 11.4
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 11.4
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 11.3
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 11.3
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 11.2
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 11.2
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 11.1
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 11.1
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 11.1
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 11.1
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 11.0
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 11.0
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 10.9
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 10.9
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 10.9
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 10.8
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 10.7
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 10.7
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 10.7
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 10.6
GTEX-QMRM-1126-SM-447BN 50-59 years, male 10.5
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 10.4
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 10.4
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 10.4
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 10.2
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 10.2
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 10.1
GTEX-13113-0726-SM-5LZUF 60-69 years, female 10.1
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 10.1
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 10.0
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 9.9
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 9.9
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 9.9
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 9.8
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 9.7
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 9.6
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 9.6
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 9.6
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 9.6
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 9.5
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 9.5
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 9.5
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 9.5
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 9.4
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 9.4
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 9.4
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 9.3
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 9.3
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 9.3
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 9.2
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 9.2
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 9.2
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 9.2
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 9.2
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 9.0
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 9.0
GTEX-V955-1326-SM-4JBHR 60-69 years, male 8.9
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 8.9
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 8.8
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 8.8
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 8.8
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 8.8
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 8.7
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 8.7
GTEX-13111-1226-SM-5GCNC 50-59 years, male 8.6
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 8.5
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 8.5
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 8.5
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 8.5
GTEX-QV31-0626-SM-447C5 30-39 years, male 8.3
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 8.2
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 8.2
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 8.1
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 8.1
GTEX-Q734-1026-SM-48U16 40-49 years, female 8.1
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 8.1
GTEX-12696-1726-SM-5EQLH 60-69 years, male 8.0
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 7.9
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 7.9
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 7.9
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 7.8
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 7.8
GTEX-S95S-0826-SM-4B64N 60-69 years, male 7.7
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 7.7
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 7.6
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 7.6
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 7.6
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 7.4
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 7.4
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 7.4
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 7.4
GTEX-R53T-1226-SM-48FCT 50-59 years, female 7.4
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 7.4
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 7.3
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 7.3
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 7.2
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 7.2
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 7.0
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 6.9
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 6.9
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 6.9
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 6.7
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 6.7
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 6.6
GTEX-PX3G-1526-SM-48U11 20-29 years, female 6.0
GTEX-QLQW-0726-SM-447AA 30-39 years, male 5.9
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 5.7
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 5.6
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 5.5
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 5.4
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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