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ABCB6
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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:16.7TPM
GTEx:47.7RPKM
FANTOM5:7.6Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Ovarian stroma cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA046723

 

Ovarian stroma cells

Medium  
 
 
 

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

16.7

overview Female, age 64 Sample 1
TPM: 16.6
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52 Sample 2
TPM: 16.7
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80 Sample 3
TPM: 16.7
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

47.7

GTEx sample id

Sample description

RPKM

Ovary
RPKM: 47.7
Samples: 97

Max RPKM: 155.1
Min RPKM: 15.9
Std RPKM: 20.9
Median RPKM: 43.2
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 155.1
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 98.2
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 94.5
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 92.9
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 86.8
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 86.0
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 84.2
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 83.4
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 82.6
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 79.6
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 73.5
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 73.4
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 70.7
GTEX-QVJO-3126-SM-4R1KC 60-69 years, female 69.5
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 64.6
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 62.7
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 62.6
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 62.2
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 61.2
GTEX-12WSB-2226-SM-5GCOS 60-69 years, female 57.8
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 57.7
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 57.2
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 57.0
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 56.3
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 56.2
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 56.0
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 54.0
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 53.1
GTEX-ZYWO-1926-SM-5E456 40-49 years, female 52.8
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 52.1
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 51.1
GTEX-Q734-0726-SM-48TZP 40-49 years, female 50.3
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 49.8
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 49.3
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 49.1
GTEX-P78B-1926-SM-3P616 40-49 years, female 48.6
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 47.6
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 47.3
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 47.1
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 46.8
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 46.6
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 46.2
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 45.5
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 45.1
GTEX-S341-0726-SM-4AD5R 40-49 years, female 45.1
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 44.2
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 43.9
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 43.5
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 43.2
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 42.8
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 42.0
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 41.4
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 41.4
GTEX-RU72-2226-SM-46MUE 50-59 years, female 41.0
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 40.7
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 40.3
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 40.1
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 40.0
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 39.0
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 38.9
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 38.7
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 37.7
GTEX-QCQG-1426-SM-48U22 50-59 years, female 37.1
GTEX-S32W-1226-SM-4AD67 50-59 years, female 37.0
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 36.5
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 36.2
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 35.2
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 34.7
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 34.7
GTEX-11I78-1926-SM-59878 50-59 years, female 34.0
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 33.2
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 33.0
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 32.7
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 32.2
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 32.2
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 32.2
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 32.0
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 31.6
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 31.4
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 31.2
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 30.5
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 30.5
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 30.2
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 29.8
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 29.7
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 29.3
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 27.8
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 27.3
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 26.9
GTEX-XUJ4-1326-SM-4BOQ9 60-69 years, female 26.1
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 25.3
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 25.1
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 25.1
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 25.0
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 24.5
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 24.0
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 15.9
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

7.6

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 7.6
FF:10020-101D2 47,75,84 years, female 7.6

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