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ABCB6
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TISSUE ATLAS PRIMARY DATA PANCREAS

GENE/PROTEIN

Antibody validation


Dictionary

Pancreas

Tissue proteome

Pancreas

PANCREAS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:1.3TPM
GTEx:6.8RPKM
FANTOM5:5.6Tags Per Million

PANCREAS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Exocrine glandular cells:Low
Islets of Langerhans:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA046723

 

Exocrine glandular cells

Medium  

Islets of Langerhans

Medium  
 
 
 

PANCREAS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

1.3

overview Female, age 59 Sample 1
TPM: 1.3
Cell types%
Exocrine glandular cells: 75
Islets of Langerhans: 10
Ductal cells: 5
Other cell types: 10
overview Male, age 60 Sample 2
TPM: 1.2
Cell types%
Exocrine glandular cells: 90
Islets of Langerhans: 5
Ductal cells: 5

PANCREAS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

6.8

GTEx sample id

Sample description

RPKM

Pancreas
RPKM: 6.8
Samples: 171

Max RPKM: 12.7
Min RPKM: 3.4
Std RPKM: 1.9
Median RPKM: 6.7
GTEX-T5JW-0226-SM-4DM7I 20-29 years, female 12.7
GTEX-13FTX-1226-SM-5IFGN 20-29 years, female 12.6
GTEX-XYKS-1226-SM-4BRVI 60-69 years, female 12.1
GTEX-QDVN-0926-SM-2I5GL 50-59 years, male 10.7
GTEX-13CF3-1026-SM-5LZWY 60-69 years, female 10.2
GTEX-1497J-0426-SM-5Q5CO 60-69 years, male 10.2
GTEX-ZYY3-0826-SM-5E44R 60-69 years, female 10.2
GTEX-144FL-1526-SM-5Q5CA 50-59 years, male 10.1
GTEX-QDVJ-1226-SM-48U1V 50-59 years, male 10.1
GTEX-ZZPU-0726-SM-5N9C8 50-59 years, female 10.1
GTEX-XBED-0226-SM-47JY8 60-69 years, male 9.7
GTEX-ZF3C-2026-SM-4WWB5 50-59 years, female 9.7
GTEX-13VXT-1226-SM-5LU3M 20-29 years, female 9.5
GTEX-Q2AH-0926-SM-48TZK 40-49 years, male 9.5
GTEX-11I78-0626-SM-5A5LZ 50-59 years, female 9.4
GTEX-ZAB4-1726-SM-5HL8C 40-49 years, male 9.4
GTEX-S32W-0826-SM-4AD5Z 50-59 years, female 9.0
GTEX-12WSL-0426-SM-5GCNX 50-59 years, male 8.9
GTEX-QV44-0426-SM-4R1KF 50-59 years, male 8.9
GTEX-X15G-0726-SM-4PQZ5 50-59 years, female 8.9
GTEX-XQ8I-1926-SM-4BOOK 50-59 years, male 8.9
GTEX-ZAB5-0826-SM-5P9FU 50-59 years, male 8.9
GTEX-132AR-1826-SM-5EGHR 50-59 years, female 8.8
GTEX-14ICL-1126-SM-5S2RE 30-39 years, male 8.8
GTEX-132QS-0926-SM-5P9GB 60-69 years, male 8.7
GTEX-145MO-2126-SM-5Q5CZ 60-69 years, male 8.6
GTEX-SNOS-0926-SM-4DM7A 40-49 years, male 8.6
GTEX-V955-0326-SM-4JBGV 60-69 years, male 8.6
GTEX-ZTPG-1026-SM-5DUWP 20-29 years, female 8.6
GTEX-V1D1-0726-SM-4JBH7 50-59 years, male 8.5
GTEX-ZG7Y-0326-SM-4WWEY 50-59 years, male 8.5
GTEX-131XG-1426-SM-5GCMO 50-59 years, female 8.4
GTEX-13W3W-1026-SM-5IFG4 60-69 years, female 8.4
GTEX-OHPM-1026-SM-3LK74 50-59 years, male 8.4
GTEX-XV7Q-0926-SM-4BRVQ 40-49 years, female 8.4
GTEX-WFON-0626-SM-4LVLX 40-49 years, male 8.3
GTEX-X5EB-0526-SM-46MVP 40-49 years, male 8.3
GTEX-13YAN-2126-SM-5Q5C4 60-69 years, male 8.2
GTEX-145ME-0326-SM-5S2QO 40-49 years, female 8.2
GTEX-S33H-1226-SM-4AD69 30-39 years, male 8.2
GTEX-S3XE-0526-SM-4AD4G 50-59 years, male 8.2
GTEX-13O61-2126-SM-5IJEO 60-69 years, male 8.1
GTEX-QEL4-1326-SM-447AD 50-59 years, male 8.1
GTEX-X4LF-0326-SM-4QAS9 50-59 years, male 8.1
GTEX-XGQ4-0226-SM-4GIDS 50-59 years, male 8.1
GTEX-PW2O-0826-SM-48TC5 20-29 years, male 8.0
GTEX-SUCS-1426-SM-4DM5W 70-79 years, male 8.0
GTEX-131XE-1926-SM-5IFER 50-59 years, male 7.9
GTEX-13OVI-0526-SM-5IFFQ 60-69 years, female 7.9
GTEX-PSDG-1526-SM-48TCY 50-59 years, male 7.9
GTEX-S4P3-0626-SM-4AD59 50-59 years, female 7.9
GTEX-13X6H-0626-SM-5LU53 50-59 years, female 7.8
GTEX-WQUQ-2126-SM-4OOSO 60-69 years, male 7.8
GTEX-11EQ9-1026-SM-5H134 30-39 years, male 7.7
GTEX-11TT1-0326-SM-5LUAY 20-29 years, male 7.7
GTEX-1399U-0926-SM-5IFHA 50-59 years, female 7.7
GTEX-NPJ8-2126-SM-3MJGK 40-49 years, male 7.7
GTEX-SIU7-0926-SM-4BRX1 50-59 years, male 7.7
GTEX-Y5LM-0526-SM-4V6G3 40-49 years, female 7.7
GTEX-YB5E-0526-SM-4VDSD 40-49 years, male 7.7
GTEX-ZC5H-0826-SM-5N9FH 40-49 years, female 7.7
GTEX-1339X-1026-SM-5IFH5 40-49 years, male 7.5
GTEX-13N11-0226-SM-5KM3C 50-59 years, female 7.5
GTEX-14E6E-1426-SM-5RQI2 30-39 years, male 7.5
GTEX-11VI4-0426-SM-5EGHZ 40-49 years, female 7.4
GTEX-WFG8-0326-SM-4LVN4 20-29 years, male 7.4
GTEX-Y8LW-1026-SM-5IFJY 50-59 years, female 7.4
GTEX-146FQ-1526-SM-5Q5CX 30-39 years, male 7.3
GTEX-14AS3-0326-SM-5Q5DB 40-49 years, female 7.3
GTEX-131XF-1426-SM-5BC68 60-69 years, male 7.2
GTEX-13FH7-1426-SM-5IFIC 50-59 years, female 7.2
GTEX-PWOO-0626-SM-48TZH 40-49 years, female 7.2
GTEX-ZP4G-0426-SM-4YCER 20-29 years, female 7.2
GTEX-ZV7C-0726-SM-59HKH 50-59 years, male 7.2
GTEX-12WSN-0826-SM-5GCOF 40-49 years, male 7.1
GTEX-13D11-2226-SM-5IFEO 50-59 years, female 7.1
GTEX-OOBK-1026-SM-48TC2 40-49 years, male 7.1
GTEX-UJMC-1126-SM-3GADP 50-59 years, male 7.1
GTEX-Y9LG-0726-SM-4VDS3 30-39 years, male 7.1
GTEX-YB5K-1826-SM-5IFJC 40-49 years, female 7.1
GTEX-13PL7-2226-SM-5L3IC 60-69 years, female 7.0
GTEX-13U4I-1526-SM-5IFFF 40-49 years, female 6.9
GTEX-R53T-0426-SM-48FEM 50-59 years, female 6.9
GTEX-ZVZP-0626-SM-59HL5 50-59 years, male 6.9
GTEX-YF7O-1326-SM-4W1ZR 50-59 years, male 6.8
GTEX-1399S-0326-SM-5IFFS 30-39 years, female 6.7
GTEX-SE5C-0326-SM-4BRWX 40-49 years, female 6.7
GTEX-W5WG-0826-SM-4RGNE 50-59 years, female 6.7
GTEX-144GN-0826-SM-5LU5G 50-59 years, male 6.6
GTEX-VJYA-0826-SM-4KL1M 60-69 years, male 6.6
GTEX-1399R-0426-SM-5IJE3 30-39 years, male 6.5
GTEX-XUW1-1726-SM-4BOOZ 50-59 years, female 6.5
GTEX-111YS-1226-SM-5EGGJ 60-69 years, male 6.4
GTEX-QCQG-0426-SM-48U29 50-59 years, female 6.4
GTEX-S95S-0726-SM-4B64H 60-69 years, male 6.4
GTEX-WI4N-1826-SM-4OOSF 40-49 years, female 6.4
GTEX-P4QS-1026-SM-3NMCW 60-69 years, male 6.3
GTEX-Y114-0826-SM-4TT77 50-59 years, female 6.3
GTEX-Y5V5-1026-SM-5LUAH 60-69 years, female 6.3
GTEX-NFK9-1626-SM-3LK5J 40-49 years, male 6.2
GTEX-ZYFG-0826-SM-5BC5T 60-69 years, female 6.2
GTEX-Y3I4-0826-SM-4TT2A 50-59 years, male 6.1
GTEX-ZLWG-0326-SM-4WWC7 50-59 years, female 6.1
GTEX-117YX-0226-SM-5EGH6 50-59 years, male 6.0
GTEX-11DXX-0926-SM-5H112 60-69 years, female 6.0
GTEX-1122O-0726-SM-5GIEV 60-69 years, female 5.9
GTEX-OOBJ-1026-SM-3NB2L 60-69 years, male 5.9
GTEX-13FTW-0526-SM-5IFIP 40-49 years, male 5.8
GTEX-PLZ6-0726-SM-3P619 30-39 years, male 5.8
GTEX-QLQW-0326-SM-447A8 30-39 years, male 5.8
GTEX-UPIC-0726-SM-3GADW 20-29 years, female 5.8
GTEX-XBEW-1626-SM-4SOJP 40-49 years, male 5.8
GTEX-ZVP2-0726-SM-59HKY 50-59 years, male 5.8
GTEX-11XUK-0626-SM-5N9ES 40-49 years, female 5.7
GTEX-TMMY-1326-SM-4DXU9 40-49 years, female 5.7
GTEX-12WSG-1026-SM-5EGII 50-59 years, female 5.6
GTEX-139YR-1526-SM-5IFJ1 50-59 years, male 5.6
GTEX-Q2AI-0426-SM-48U13 40-49 years, male 5.6
GTEX-WFJO-0626-SM-4LVMC 30-39 years, male 5.6
GTEX-YFCO-1026-SM-5LU9S 40-49 years, male 5.6
GTEX-11NSD-0526-SM-5A5LT 20-29 years, male 5.5
GTEX-RWS6-1126-SM-47JXC 60-69 years, female 5.5
GTEX-T8EM-0826-SM-4DM76 40-49 years, male 5.5
GTEX-XMK1-0326-SM-4B652 40-49 years, male 5.5
GTEX-ZVT2-2026-SM-5NQ8Q 50-59 years, female 5.5
GTEX-P4PQ-1026-SM-3NMCN 60-69 years, male 5.4
GTEX-Q734-0426-SM-48TZX 40-49 years, female 5.4
GTEX-TML8-0526-SM-32QOQ 40-49 years, female 5.4
GTEX-11P7K-0526-SM-5BC5I 30-39 years, male 5.3
GTEX-111CU-0526-SM-5EGHK 50-59 years, male 5.2
GTEX-U4B1-0726-SM-4DXUA 40-49 years, male 5.2
GTEX-11ONC-0526-SM-5BC57 60-69 years, male 5.1
GTEX-ZPU1-0226-SM-4WWC9 40-49 years, male 5.1
GTEX-R55D-1426-SM-48FEN 50-59 years, male 5.0
GTEX-X3Y1-0726-SM-3P5YU 40-49 years, male 5.0
GTEX-YEC3-0626-SM-5IFHZ 50-59 years, male 5.0
GTEX-O5YT-1026-SM-3MJGF 20-29 years, male 4.8
GTEX-WHWD-0726-SM-4OORX 50-59 years, male 4.8
GTEX-Y8E4-1326-SM-5IFIY 40-49 years, male 4.8
GTEX-11LCK-0226-SM-5A5M6 30-39 years, male 4.6
GTEX-UJHI-0626-SM-3DB8T 50-59 years, female 4.6
GTEX-QLQ7-0626-SM-4R1JT 60-69 years, male 4.5
GTEX-WH7G-0826-SM-4LVMR 40-49 years, male 4.5
GTEX-YEC4-1326-SM-5IFHG 40-49 years, male 4.5
GTEX-1128S-0826-SM-5GZZI 60-69 years, female 4.4
GTEX-1211K-1126-SM-5EGGB 60-69 years, female 4.4
GTEX-12WSK-0226-SM-5BC62 40-49 years, female 4.4
GTEX-WFG7-0426-SM-4LMK5 20-29 years, male 4.4
GTEX-ZT9W-0926-SM-57WFS 50-59 years, male 4.4
GTEX-R55G-0326-SM-48FDM 40-49 years, female 4.3
GTEX-TKQ2-0426-SM-4DXUO 50-59 years, male 4.3
GTEX-ZLFU-0726-SM-57WF6 40-49 years, male 4.3
GTEX-12BJ1-1126-SM-5EGGG 60-69 years, male 4.2
GTEX-13O1R-1826-SM-5KM3B 60-69 years, male 4.2
GTEX-OHPL-1026-SM-3MJGI 60-69 years, female 4.2
GTEX-XPVG-0326-SM-4B653 50-59 years, male 4.2
GTEX-Y3IK-0426-SM-4WWE2 50-59 years, female 4.2
GTEX-PX3G-1026-SM-48TZW 20-29 years, female 4.1
GTEX-XXEK-1726-SM-4BRVB 50-59 years, male 4.1
GTEX-QMRM-0326-SM-4R1K5 50-59 years, male 4.0
GTEX-WYVS-0926-SM-4SOJV 40-49 years, female 4.0
GTEX-ZPIC-0926-SM-4WWFK 40-49 years, female 4.0
GTEX-146FR-0126-SM-5Q5F3 60-69 years, female 3.9
GTEX-P4PP-1026-SM-3NM9O 30-39 years, female 3.9
GTEX-WRHK-0226-SM-4MVOH 20-29 years, female 3.9
GTEX-ZYWO-1326-SM-5SI8X 40-49 years, female 3.9
GTEX-ZYW4-2126-SM-59HJ9 60-69 years, male 3.7
GTEX-RM2N-0326-SM-48FD8 50-59 years, male 3.6
GTEX-145MN-1426-SM-5SI9H 30-39 years, male 3.5
GTEX-QV31-0226-SM-447BO 30-39 years, male 3.5
GTEX-13FLV-0626-SM-5IFEY 50-59 years, male 3.4
Show all

PANCREAS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

5.6

FANTOM5 sample id

Sample description

Tags Per Million

Pancreas
Tags Per Million: 5.6
FF:10049-101G4 52 years, male 5.6

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