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ABCA6
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TISSUE ATLAS SMALL INTESTINE

GENE/PROTEIN

Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:4.5TPM
GTEx:4.1RPKM
FANTOM5:10.7Tags Per Million

SMALL INTESTINE - Annotated protein expression

Pending normal tissue analysis


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

4.5

overview Male, age 65 Sample 1
TPM: 3.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 3.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 4.7
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 6.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

4.1

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 4.1
Samples: 88

Max RPKM: 20.2
Min RPKM: 0.8
Std RPKM: 3.3
Median RPKM: 3.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 20.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 15.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 12.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 12.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 10.7
GTEX-1192X-2526-SM-59868 50-59 years, male 10.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 9.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 9.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 8.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 8.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 8.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 6.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 6.8
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 6.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 6.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 5.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 5.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 5.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 5.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 5.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 5.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 4.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 4.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 4.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 4.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 3.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 3.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 3.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 3.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 3.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 3.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 3.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 0.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 0.8
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

10.7

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 10.7
FF:10024-101D6 15,40,85 years, mixed 10.7

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