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    TISSUE

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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:77.5RPKM
FANTOM5:295.0Tags Per Million

CAUDATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glial cells:Low
Neuronal cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB018702

 

Antibody CAB069993

 

Glial cells

Low   Not detected  

Neuronal cells

Not detected   Low  
   
   
   

CAUDATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

77.5

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 77.5
Samples: 117

Max RPKM: 207.9
Min RPKM: 5.7
Std RPKM: 44.8
Median RPKM: 76.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 207.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 193.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 178.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 178.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 158.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 149.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 140.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 139.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 137.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 135.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 135.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 135.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 134.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 133.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 133.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 131.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 131.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 126.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 125.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 120.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 119.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 118.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 118.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 117.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 116.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 114.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 114.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 113.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 113.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 112.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 110.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 107.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 107.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 106.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 105.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 103.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 103.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 102.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 99.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 99.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 99.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 98.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 98.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 95.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 94.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 91.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 90.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 89.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 88.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 86.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 86.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 86.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 85.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 82.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 79.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 78.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 77.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 77.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 76.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 75.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 74.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 71.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 69.6
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 69.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 65.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 63.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 61.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 60.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 58.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 58.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 57.7
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 57.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 56.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 52.2
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 52.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 52.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 51.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 49.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 48.0
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 47.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 45.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 45.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 44.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 43.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 42.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 41.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 41.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 40.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 39.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 39.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 38.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 35.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 33.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 30.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 29.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 28.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 28.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 25.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 24.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 23.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 22.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 21.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 20.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 18.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 18.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 18.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 17.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 17.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 15.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 13.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 12.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 10.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 5.7
Show all

CAUDATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

295.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 366.2
FF:10164-103B2 76 years, female 366.2

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