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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:44.0TPM
GTEx:102.9RPKM
FANTOM5:148.7Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002265

 

Antibody CAB017621

 

Glandular cells

Not detected   Not detected  
   
   
   

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

44.0

overview Female, age 68 Sample 1
TPM: 69.2
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60 Sample 2
TPM: 26.9
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21 Sample 3
TPM: 36
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

102.9

GTEx sample id

Sample description

RPKM

Minor Salivary Gland
RPKM: 102.9
Samples: 57

Max RPKM: 273.3
Min RPKM: 8.8
Std RPKM: 55.5
Median RPKM: 100.5
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 273.3
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 241.6
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 212.2
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 192.7
GTEX-X261-2426-SM-4PQZU 50-59 years, male 191.2
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 185.3
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 178.5
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 171.3
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 151.3
GTEX-13113-1526-SM-5EGHV 60-69 years, female 147.0
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 144.3
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 140.4
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 136.9
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 132.7
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 130.3
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 127.1
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 127.0
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 124.2
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 122.7
GTEX-13NYC-2626-SM-5K7VN 60-69 years, male 121.7
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 120.8
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 117.4
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 111.4
GTEX-1445S-2926-SM-5O993 60-69 years, male 107.9
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 104.4
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 101.3
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 100.9
GTEX-11P82-0926-SM-5986X 20-29 years, male 100.9
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 100.5
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 93.8
GTEX-WOFM-2126-SM-4OOSR 20-29 years, male 93.2
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 91.5
GTEX-13O21-1926-SM-5MR39 50-59 years, male 90.9
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 89.7
GTEX-146FR-1226-SM-5SIA7 60-69 years, female 89.2
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 85.9
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 78.2
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 68.8
GTEX-Y111-2626-SM-4TT24 50-59 years, male 66.6
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 63.2
GTEX-ZQG8-2126-SM-4YCF1 60-69 years, female 62.8
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 60.5
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 58.6
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 55.2
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 53.1
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 51.0
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 49.7
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 45.0
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 43.0
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 40.4
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 38.0
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 37.5
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 36.8
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 35.3
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 34.6
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 25.0
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 8.8
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

148.7

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 148.7
FF:10093-102C3 16-60 years, mixed 148.7

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