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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 759.5
Min RPKM: 7.4
Std RPKM: 115.3
Median RPKM: 105.2
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
759.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
393.2
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
359.8
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
356.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
348.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
336.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
319.5
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
319.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
279.2
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
269.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
266.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
261.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
260.9
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
254.2
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
239.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
236.1
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
235.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
234.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
232.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
230.2
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
227.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
214.9
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
210.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
206.5
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
204.1
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
203.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
189.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
185.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
182.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
176.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
167.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
156.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
153.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
153.3
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
151.1
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
149.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
141.8
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
139.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
136.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
130.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
126.6
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
125.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
120.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
115.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
110.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
108.7
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
108.0
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
106.2
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
104.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
104.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
100.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
93.4
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
93.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
90.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
90.0
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
89.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
87.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
81.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
80.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
77.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
68.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
66.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
64.6
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
62.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
61.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
59.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
59.1
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
53.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
52.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
49.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
49.7
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
48.4
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
46.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
46.2
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
45.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
44.6
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
44.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
44.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
43.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
39.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
37.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
35.4
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
32.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
30.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
30.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
30.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
28.0
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
25.5
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
24.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
24.1
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
23.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
23.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
20.5
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
19.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
12.5
GTEX-11I78-2026-SM-5987C
50-59 years, female
7.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.