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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:70.9TPM
GTEx:344.0RPKM
FANTOM5:61.7Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA011271

 

Antibody HPA011272

 

Antibody CAB013023

 

Antibody CAB035987

 

Antibody CAB058693

 

Glandular cells

Medium   Medium   Medium   Medium   Medium  
         
         
         

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

70.9

overview Female, age 68 Sample 1
TPM: 110
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60 Sample 2
TPM: 48.8
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21 Sample 3
TPM: 53.9
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

344.0

GTEx sample id

Sample description

RPKM

Minor Salivary Gland
RPKM: 344.0
Samples: 57

Max RPKM: 2193.6
Min RPKM: 21.6
Std RPKM: 575.2
Median RPKM: 123.6
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 2193.6
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 2092.8
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 2008.5
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 1836.2
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 1822.4
GTEX-ZQG8-2126-SM-4YCF1 60-69 years, female 1399.0
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 1310.1
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 1008.1
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 370.6
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 273.0
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 258.2
GTEX-X261-2426-SM-4PQZU 50-59 years, male 245.3
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 235.5
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 221.0
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 220.3
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 209.2
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 193.0
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 187.2
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 184.0
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 180.3
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 153.2
GTEX-13113-1526-SM-5EGHV 60-69 years, female 149.4
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 145.6
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 142.7
GTEX-WOFM-2126-SM-4OOSR 20-29 years, male 142.6
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 140.2
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 137.3
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 127.9
GTEX-13O21-1926-SM-5MR39 50-59 years, male 123.6
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 121.9
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 105.4
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 101.0
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 99.9
GTEX-146FR-1226-SM-5SIA7 60-69 years, female 91.2
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 89.4
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 88.3
GTEX-1445S-2926-SM-5O993 60-69 years, male 85.8
GTEX-Y111-2626-SM-4TT24 50-59 years, male 83.5
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 80.8
GTEX-11P82-0926-SM-5986X 20-29 years, male 79.7
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 79.2
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 73.5
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 71.7
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 69.4
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 65.4
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 61.4
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 58.6
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 56.1
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 55.6
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 52.5
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 45.4
GTEX-13NYC-2626-SM-5K7VN 60-69 years, male 35.8
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 34.2
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 30.3
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 29.9
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 29.8
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 21.6
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

61.7

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 61.7
FF:10093-102C3 16-60 years, mixed 61.7

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