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GDE1

COLON - Expression summary

RNA expression
HPA:40.6TPM
GTEx:24.5RPKM
FANTOM5:51.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

40.6
overview Male, age 54 Sample 1
TPM: 41.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 29.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 30.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 45.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 49.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 55.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 43.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 35.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 42.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 38.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 52.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 42.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

24.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 26.0
Samples: 149

Max RPKM: 39.1
Min RPKM: 13.5
Std RPKM: 5.8
Median RPKM: 26.2
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 39.1
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 38.6
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 37.4
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 36.3
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 36.1
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 35.7
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 35.3
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 35.2
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 34.5
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 34.4
Show all
Colon - Transverse
RPKM: 23.4
Samples: 196

Max RPKM: 39.8
Min RPKM: 11.5
Std RPKM: 4.9
Median RPKM: 22.6
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 39.8
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 36.9
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 35.3
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 35.0
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 35.0
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 34.1
GTEX-S3XE-1126-SM-4AD4N 50-59 years, male 33.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 33.3
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 33.2
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 32.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

51.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 51.8
FF:10014-101C5 62,83,84 years, mixed 51.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.