Fields »
ABOUT
HELP
BLOG
NUP160

COLON - Expression summary

RNA expression
HPA:12.2TPM
GTEx:5.1RPKM
FANTOM5:14.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

12.2
overview Male, age 54 Sample 1
TPM: 11.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 16.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 15.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.2
Samples: 149

Max RPKM: 8.1
Min RPKM: 2.8
Std RPKM: 0.8
Median RPKM: 5.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 8.1
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 7.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 7.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 7.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 7.1
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 7.0
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 6.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 6.7
GTEX-145LS-2926-SM-5O99G 60-69 years, female 6.7
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 6.7
Show all
Colon - Transverse
RPKM: 5.1
Samples: 196

Max RPKM: 7.7
Min RPKM: 2.8
Std RPKM: 0.9
Median RPKM: 5.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 7.7
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 7.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 7.6
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 7.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 7.4
GTEX-144GN-1126-SM-5LU33 50-59 years, male 7.3
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 7.3
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 7.2
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 7.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 6.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.8
FF:10014-101C5 62,83,84 years, mixed 14.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.