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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.3TPM
GTEx:0.8RPKM
FANTOM5:38.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA000243

  

Antibody HPA000570

  

Endothelial cells

 Medium   Not detected  

Glandular cells

 High   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

5.3
overview Male, age 54 Sample 1
TPM: 3.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 6.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.2
Samples: 149

Max RPKM: 2.7
Min RPKM: 0.0
Std RPKM: 0.3
Median RPKM: 0.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 2.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 2.6
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 1.5
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 1.2
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 1.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 1.0
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 0.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 0.9
GTEX-12696-1926-SM-5EGJT 60-69 years, male 0.7
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 0.6
Show all
Colon - Transverse
RPKM: 1.3
Samples: 196

Max RPKM: 9.7
Min RPKM: 0.0
Std RPKM: 1.5
Median RPKM: 0.9
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 9.7
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 9.6
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 8.5
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 7.7
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 6.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 5.9
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 5.2
GTEX-Q734-1126-SM-48TZY 40-49 years, female 5.2
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 4.4
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 4.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

38.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 38.8
FF:10014-101C5 62,83,84 years, mixed 38.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.