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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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ACAA1
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    TISSUE

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    CELL

  • PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

GENERAL INFORMATION

Gene name

ACAA1

Gene description

Acetyl-CoA acyltransferase 1

Protein class

Enzymes
FDA approved drug targets
Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

7
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Expressed in all
HPA (cell line):Expressed in all
HPA (normal tissue):Expressed in all

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Cytoplasmic expression in most glandular cells. Distinct expression in hepatocytes, heart muscle and neuronal cells in CNS.

ANTIBODY IHC RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 2 antibodies.
HPA006764 , HPA007244
SHOW MORE

PROGNOSTIC SUMMARY

Prognostic marker in renal cancer (favourable), head and neck cancer (favourable), breast cancer (favourable) and endometrial cancer (favourable).
Renal cancer p<0.001
Head and neck cancer p<0.001
Breast cancer p<0.001
Endometrial cancer p<0.001
Show all

RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Expressed in all

PROTEIN EXPRESSION

Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer

STAINING SUMMARY

HPA006764
HPA007244

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Malignant cell in general showed weak cytoplasmic positivity with a granular pattern or were negative. Moderate to strong staining was observed in several colorectal, prostate, urothelial, renal, gastric and pancreatic cancers.

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Prostate cancer along with several malignant melanomas, lung, ovarian, endometrial, pancreatic, renal and liver cancers displayed moderate cytoplasmic positivity. Remaining malignant cells were generally weakly stained or negative.

GENE INFORMATION

Gene name

ACAA1

Synonyms

Description

Acetyl-CoA acyltransferase 1 (HGNC Symbol)

Entrez gene summary

This gene encodes an enzyme operative in the beta-oxidation system of the peroxisomes. Deficiency of this enzyme leads to pseudo-Zellweger syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2008]

Chromosome

3

Cytoband

p22.2

Chromosome location (bp)

38103129 - 38137242

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000060971 (version 83.38)

Entrez gene

30

UniProt

P09110 (UniProt - Evidence at protein level)

neXtProt

NX_P09110

Antibodypedia

ACAA1 antibodies

PROTEIN BROWSER

ACAA1-001
ACAA1-002
ACAA1-007
ACAA1-014
ACAA1-019
ACAA1-201
ACAA1-202

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

ACAA1-001
ENSP00000333664
ENST00000333167
P09110 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
A0A024R2M6 [Target identity:100%; Query identity:100%]
Acetyl-Coenzyme A acyltransferase 1 (Peroxisomal 3-oxoacyl-Coenzyme A thiolase), isoform CRA_a
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Enzymes
   ENZYME proteins
   Transferases
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
FDA approved drug targets
   Small molecule drugs
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000038 [very long-chain fatty acid metabolic process]
GO:0003824 [catalytic activity]
GO:0003988 [acetyl-CoA C-acyltransferase activity]
GO:0005515 [protein binding]
GO:0005777 [peroxisome]
GO:0005782 [peroxisomal matrix]
GO:0006635 [fatty acid beta-oxidation]
GO:0008152 [metabolic process]
GO:0008206 [bile acid metabolic process]
GO:0016020 [membrane]
GO:0016401 [palmitoyl-CoA oxidase activity]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
GO:0033540 [fatty acid beta-oxidation using acyl-CoA oxidase]
GO:0033559 [unsaturated fatty acid metabolic process]
GO:0036109 [alpha-linolenic acid metabolic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044255 [cellular lipid metabolic process]
GO:0044281 [small molecule metabolic process]
Show all
424 aa
44.3 kDa
No 0
ACAA1-002
ENSP00000301810
ENST00000301810
P09110 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
Show all
Enzymes
   ENZYME proteins
   Transferases
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
FDA approved drug targets
   Small molecule drugs
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000038 [very long-chain fatty acid metabolic process]
GO:0003824 [catalytic activity]
GO:0003988 [acetyl-CoA C-acyltransferase activity]
GO:0005515 [protein binding]
GO:0005777 [peroxisome]
GO:0005782 [peroxisomal matrix]
GO:0006635 [fatty acid beta-oxidation]
GO:0008152 [metabolic process]
GO:0008206 [bile acid metabolic process]
GO:0016020 [membrane]
GO:0016401 [palmitoyl-CoA oxidase activity]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
GO:0033540 [fatty acid beta-oxidation using acyl-CoA oxidase]
GO:0033559 [unsaturated fatty acid metabolic process]
GO:0036109 [alpha-linolenic acid metabolic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044255 [cellular lipid metabolic process]
GO:0044281 [small molecule metabolic process]
Show all
331 aa
34.7 kDa
No 0
ACAA1-007
ENSP00000395183
ENST00000450296
C9JDE9 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0008152 [metabolic process]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
383 aa
40.3 kDa
No 0
ACAA1-014
ENSP00000398172
ENST00000421218
H7C131 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0008152 [metabolic process]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
Show all
290 aa
30.2 kDa
No 0
ACAA1-019
ENSP00000391078
ENST00000452171
H0Y4D4 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0008152 [metabolic process]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
Show all
237 aa
24.9 kDa
No 0
ACAA1-201
ENSP00000486456
ENST00000625927
F2Z2Q6 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0008152 [metabolic process]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
Show all
113 aa
12.2 kDa
No 0
ACAA1-202
ENSP00000486920
ENST00000627515
F2Z3P7 [Direct mapping]
3-ketoacyl-CoA thiolase, peroxisomal
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0008152 [metabolic process]
GO:0016747 [transferase activity, transferring acyl groups other than amino-acyl groups]
Show all
121 aa
13 kDa
No 0

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