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COLON - Expression summary

RNA expression
HPA:28.5TPM
GTEx:11.9RPKM
FANTOM5:58.2Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

28.5
overview Male, age 54 Sample 1
TPM: 27.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 37.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 33.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 28.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 27.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 28.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 27.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 23.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 31
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 31.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.5
Samples: 149

Max RPKM: 16.6
Min RPKM: 5.0
Std RPKM: 1.7
Median RPKM: 11.6
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 16.6
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 14.9
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 14.5
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 14.4
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 14.4
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 14.2
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 14.2
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 14.1
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 14.0
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 13.7
Show all
Colon - Transverse
RPKM: 12.3
Samples: 196

Max RPKM: 16.4
Min RPKM: 3.8
Std RPKM: 1.8
Median RPKM: 12.5
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 16.4
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 16.4
GTEX-QCQG-1626-SM-48U26 50-59 years, female 15.6
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 15.2
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 15.2
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 15.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 14.8
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 14.7
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 14.6
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 14.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

58.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 58.2
FF:10014-101C5 62,83,84 years, mixed 58.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.