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ATXN3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:7.9TPM
GTEx:2.6RPKM
FANTOM5:14.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA024123

  

Antibody CAB021976

  

Endothelial cells

 Medium   High  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

7.9
overview Male, age 54 Sample 1
TPM: 7.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 7.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.8
Samples: 149

Max RPKM: 4.4
Min RPKM: 1.7
Std RPKM: 0.5
Median RPKM: 2.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 4.4
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 4.3
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 4.1
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 4.0
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 4.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 4.0
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 4.0
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 3.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 3.9
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 3.8
Show all
Colon - Transverse
RPKM: 2.4
Samples: 196

Max RPKM: 4.6
Min RPKM: 1.2
Std RPKM: 0.6
Median RPKM: 2.3
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 4.6
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 4.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 4.1
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 4.0
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 3.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 3.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 3.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 3.7
GTEX-1128S-1626-SM-5H12O 60-69 years, female 3.5
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 3.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.2
FF:10014-101C5 62,83,84 years, mixed 14.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.