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COLON - Expression summary

RNA expression
HPA:17.2TPM
GTEx:7.2RPKM
FANTOM5:22.0Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA038852

  

Endothelial cells

 Low  

Glandular cells

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

17.2
overview Male, age 54 Sample 1
TPM: 21.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 25.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 25.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 25.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 15.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 13.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 15.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 15.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.2
Samples: 149

Max RPKM: 14.8
Min RPKM: 3.8
Std RPKM: 2.2
Median RPKM: 6.7
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 14.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 14.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 13.1
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 12.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 12.4
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 12.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 12.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 11.7
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 11.6
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 11.6
Show all
Colon - Transverse
RPKM: 7.2
Samples: 196

Max RPKM: 15.7
Min RPKM: 3.8
Std RPKM: 1.9
Median RPKM: 6.7
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 15.7
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 13.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 13.3
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 12.5
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 12.4
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 12.3
GTEX-1128S-1626-SM-5H12O 60-69 years, female 11.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 11.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 11.1
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 10.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

22.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 22.0
FF:10014-101C5 62,83,84 years, mixed 22.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.