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ACTN1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:119.1TPM
GTEx:162.6RPKM
FANTOM5:239.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA006035

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

119.1
overview Male, age 54 Sample 1
TPM: 73.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 66.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 62.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 53.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 71.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 497.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 67.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 46.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 217.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 52.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 113.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 139.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 86.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

162.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 238.4
Samples: 149

Max RPKM: 467.7
Min RPKM: 98.7
Std RPKM: 62.6
Median RPKM: 230.6
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 467.7
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 446.7
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 412.1
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 371.8
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 371.4
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 368.0
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 352.1
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 350.2
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 341.8
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 336.1
Show all
Colon - Transverse
RPKM: 104.9
Samples: 196

Max RPKM: 409.0
Min RPKM: 6.5
Std RPKM: 92.1
Median RPKM: 72.8
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 409.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 379.0
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 374.7
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 359.0
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 352.2
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 330.3
GTEX-11GSP-1626-SM-5986N 60-69 years, female 293.9
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 286.9
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 284.6
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 281.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

239.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 239.0
FF:10014-101C5 62,83,84 years, mixed 239.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.