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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2099.3TPM
GTEx:3144.2RPKM
FANTOM5:5597.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA041264

  

Antibody HPA041271

  

Antibody CAB002621

  

Endothelial cells

 High   High   Low  

Glandular cells

 Medium   Medium   Medium  

Peripheral nerve/ganglion

 High   Not detected   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

2099.3
overview Male, age 54 Sample 1
TPM: 1349.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1217.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1077.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2271.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1092.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6273.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1975.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1599.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2786
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1729.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1937.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2090.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1890.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3144.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4137.9
Samples: 149

Max RPKM: 6673.5
Min RPKM: 1825.4
Std RPKM: 973.9
Median RPKM: 4038.5
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 6673.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 6613.3
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 6395.5
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 6186.0
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 6038.5
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 6003.5
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 5891.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 5863.9
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 5857.2
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 5852.3
Show all
Colon - Transverse
RPKM: 2388.8
Samples: 196

Max RPKM: 7749.4
Min RPKM: 742.0
Std RPKM: 1265.0
Median RPKM: 2061.6
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 7749.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 6299.9
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 6202.8
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 5512.9
GTEX-11GSP-1626-SM-5986N 60-69 years, female 5417.2
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 5198.7
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 4948.8
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 4908.3
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 4828.8
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 4751.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

5597.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 5597.2
FF:10014-101C5 62,83,84 years, mixed 5597.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.