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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.4TPM
GTEx:26.3RPKM
FANTOM5:56.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA024120

  

Antibody CAB004601

  

Endothelial cells

 Low   Medium  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

30.4
overview Male, age 54 Sample 1
TPM: 37
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 34.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 25.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 22.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 28
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 28.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 32.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 31.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 30.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 41.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 35.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

26.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 28.8
Samples: 149

Max RPKM: 41.5
Min RPKM: 16.5
Std RPKM: 4.8
Median RPKM: 29.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 41.5
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 40.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 40.0
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 39.2
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 37.7
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 37.0
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 36.9
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 36.8
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 36.6
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 36.4
Show all
Colon - Transverse
RPKM: 24.5
Samples: 196

Max RPKM: 42.3
Min RPKM: 11.5
Std RPKM: 5.6
Median RPKM: 23.0
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 42.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 39.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 38.5
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 38.5
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 38.0
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 37.3
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 36.6
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 35.7
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 35.4
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 35.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.5
FF:10014-101C5 62,83,84 years, mixed 56.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.