Tissue expression of RNF13 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	RNF13
Gene description	Ring finger protein 13
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	13
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	RNF13 (HGNC Symbol)
Synonyms	RZF
Description	Ring finger protein 13 (HGNC Symbol)
Entrez gene summary	The protein encoded by this gene contains a RING zinc finger, a motif known to be involved in protein-protein interactions. The specific function of this gene has not yet been determined. Alternatively spliced transcript variants that encode the same protein have been reported. A pseudogene, which is also located on chromosome 3, has been defined for this gene. [provided by RefSeq, Jul 2008]
Chromosome	3
Cytoband	q25.1
Chromosome location (bp)	149812708 - 149962139
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000082996 (version 83.38)
Entrez gene	11342
UniProt	O43567 (UniProt - Evidence at protein level)
neXtProt	NX_O43567
Antibodypedia	RNF13 antibodies

PROTEIN BROWSER

RNF13-001	RNF13-002	RNF13-003	RNF13-005	RNF13-006	RNF13-007	RNF13-008	RNF13-009	RNF13-010	RNF13-011	RNF13-015	RNF13-017	RNF13-018

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RNF13-001 ENSP00000376628 ENST00000392894	O43567 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0004842 [ubiquitin-protein transferase activity] GO:0005515 [protein binding] GO:0005637 [nuclear inner membrane] GO:0005765 [lysosomal membrane] GO:0005789 [endoplasmic reticulum membrane] GO:0008270 [zinc ion binding] GO:0016021 [integral component of membrane] GO:0016874 [ligase activity] GO:0031902 [late endosome membrane] GO:0051865 [protein autoubiquitination] Show all	381 aa 42.8 kDa	Yes	1
RNF13-002 ENSP00000355268 ENST00000361785	O43567 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0004842 [ubiquitin-protein transferase activity] GO:0005515 [protein binding] GO:0005637 [nuclear inner membrane] GO:0005765 [lysosomal membrane] GO:0005789 [endoplasmic reticulum membrane] GO:0008270 [zinc ion binding] GO:0016021 [integral component of membrane] GO:0016874 [ligase activity] GO:0031902 [late endosome membrane] GO:0051865 [protein autoubiquitination] Show all	262 aa 29.7 kDa	No	1
RNF13-003 ENSP00000341361 ENST00000344229	O43567 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0004842 [ubiquitin-protein transferase activity] GO:0005515 [protein binding] GO:0005637 [nuclear inner membrane] GO:0005765 [lysosomal membrane] GO:0005789 [endoplasmic reticulum membrane] GO:0008270 [zinc ion binding] GO:0016021 [integral component of membrane] GO:0016874 [ligase activity] GO:0031902 [late endosome membrane] GO:0051865 [protein autoubiquitination] GO:0061630 [ubiquitin protein ligase activity] Show all	381 aa 42.8 kDa	Yes	1
RNF13-005 ENSP00000419836 ENST00000470151	C9JYY4 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		80 aa 8.9 kDa	No	0
RNF13-006 ENSP00000419508 ENST00000466478	C9JU37 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		72 aa 8 kDa	No	0
RNF13-007 ENSP00000420667 ENST00000491086	C9JCY0 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] GO:0008270 [zinc ion binding] GO:0016021 [integral component of membrane] Show all	233 aa 26.4 kDa	No	1
RNF13-008 ENSP00000418308 ENST00000467977	C9J7B4 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] GO:0008270 [zinc ion binding] GO:0016021 [integral component of membrane] Show all	150 aa 17.3 kDa	No	1
RNF13-009 ENSP00000420067 ENST00000468648	C9JRV0 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		115 aa 12.7 kDa	No	0
RNF13-010 ENSP00000419069 ENST00000459632	C9JYN7 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		165 aa 18.2 kDa	No	0
RNF13-011 ENSP00000417655 ENST00000466795	C9J8T4 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		163 aa 17.9 kDa	No	0
RNF13-015 ENSP00000417294 ENST00000490631	C9J383 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	192 aa 21.7 kDa	Yes	1
RNF13-017 ENSP00000418863 ENST00000482083	C9IY58 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] GO:0008270 [zinc ion binding] GO:0016021 [integral component of membrane] Show all	232 aa 26.3 kDa	No	1
RNF13-018 ENSP00000420510 ENST00000468289	H7C5Q6 [Direct mapping] E3 ubiquitin-protein ligase RNF13 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	183 aa 20.8 kDa	No	1