Tissue expression of SCAMP1 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	SCAMP1
Gene description	Secretory carrier membrane protein 1
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	5
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	SCAMP1 (HGNC Symbol)
Synonyms	SCAMP37
Description	Secretory carrier membrane protein 1 (HGNC Symbol)
Entrez gene summary	This gene product belongs to the SCAMP family of proteins, which are secretory carrier membrane proteins. They function as carriers to the cell surface in post-golgi recycling pathways. Different family members are highly related products of distinct genes, and are usually expressed together. These findings suggest that these protein family members may function at the same site during vesicular transport rather than in separate pathways. A pseudogene of this gene has been defined on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]
Chromosome	5
Cytoband	q14.1
Chromosome location (bp)	78360583 - 78479071
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000085365 (version 83.38)
Entrez gene	9522
UniProt	O15126 (UniProt - Evidence at protein level)
neXtProt	NX_O15126
Antibodypedia	SCAMP1 antibodies

PROTEIN BROWSER

SCAMP1-001	SCAMP1-003	SCAMP1-005	SCAMP1-007	SCAMP1-008

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SCAMP1-001 ENSP00000481022 ENST00000621999	O15126 [Direct mapping] Secretory carrier-associated membrane protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 4TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005515 [protein binding] GO:0005802 [trans-Golgi network] GO:0006887 [exocytosis] GO:0006892 [post-Golgi vesicle-mediated transport] GO:0015031 [protein transport] GO:0016021 [integral component of membrane] GO:0030136 [clathrin-coated vesicle] GO:0030672 [synaptic vesicle membrane] GO:0042589 [zymogen granule membrane] GO:0045202 [synapse] GO:0055038 [recycling endosome membrane] Show all	338 aa 37.9 kDa	No	4
SCAMP1-003 ENSP00000480865 ENST00000618166	A0A087WXB0 [Direct mapping] Secretory carrier-associated membrane protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 4TM proteins predicted by MDM Show all	GO:0015031 [protein transport] GO:0016021 [integral component of membrane] Show all	312 aa 35 kDa	No	4
SCAMP1-005 ENSP00000478292 ENST00000320280	A0A087WU14 [Direct mapping] Secretory carrier-associated membrane protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Show all	GO:0015031 [protein transport] GO:0016021 [integral component of membrane] Show all	206 aa 22.9 kDa	No	3
SCAMP1-007 ENSP00000478205 ENST00000510030	A0A087WTX8 [Direct mapping] Secretory carrier-associated membrane protein 1 Show all	Predicted intracellular proteins Show all	GO:0015031 [protein transport] GO:0016021 [integral component of membrane] Show all	42 aa 4.8 kDa	No	0
SCAMP1-008 ENSP00000482491 ENST00000511551	A0A087WZA6 [Direct mapping] Secretory carrier-associated membrane protein 1 Show all	Predicted intracellular proteins Show all	GO:0015031 [protein transport] GO:0016021 [integral component of membrane] Show all	119 aa 13.3 kDa	No	0