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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.4TPM
GTEx:22.6RPKM
FANTOM5:44.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA039722

  

Antibody HPA040155

  

Endothelial cells

 High   Not detected  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

30.4
overview Male, age 54 Sample 1
TPM: 25.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 22.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 37.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 22.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 39.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 30.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 27.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 30.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 37.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 33.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 43.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

22.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.2
Samples: 149

Max RPKM: 38.7
Min RPKM: 9.9
Std RPKM: 5.8
Median RPKM: 19.6
GTEX-V955-1726-SM-4JBHF 60-69 years, male 38.7
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 36.2
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 36.0
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 34.0
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 33.3
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 33.1
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 30.8
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 29.7
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 29.5
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 29.4
Show all
Colon - Transverse
RPKM: 24.4
Samples: 196

Max RPKM: 49.0
Min RPKM: 8.4
Std RPKM: 7.8
Median RPKM: 23.8
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 49.0
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 47.1
GTEX-R55D-1826-SM-48FEF 50-59 years, male 44.3
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 44.1
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 41.9
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 39.1
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 38.2
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 38.2
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 38.2
GTEX-XQ8I-2126-SM-4BOOM 50-59 years, male 38.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

44.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 44.5
FF:10014-101C5 62,83,84 years, mixed 44.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.