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CMTM6

GENERAL INFORMATION

Gene name

 CMTM6

Gene description

 CKLF-like MARVEL transmembrane domain containing 6

Protein class

 Predicted membrane proteins

Predicted localization

 Membrane

Number of transcripts

 1
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 Cytoplasmic expression in most tissues.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly consistent with RNA expression data.

Reliability score

 Approved based on 1 antibody.
HPA026980
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Fallopian tube

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 CMTM6 (HGNC Symbol)

Synonyms

 CKLFSF6, FLJ20396

Description

 CKLF-like MARVEL transmembrane domain containing 6 (HGNC Symbol)

Entrez gene summary

 This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 3. This gene is widely expressed in many tissues, but the exact function of the encoded protein is unknown. [provided by RefSeq, Jul 2008]

Chromosome

 3

Cytoband

 p22.3

Chromosome location (bp)

 32481312 - 32503408

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000091317 (version 83.38)

Entrez gene

 54918

UniProt

 Q9NX76 (UniProt - Evidence at protein level)

neXtProt

 NX_Q9NX76

Antibodypedia

 CMTM6 antibodies

PROTEIN BROWSER
CMTM6-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
CMTM6-001
ENSP00000205636
ENST00000205636
Q9NX76 [Direct mapping]
CKLF-like MARVEL transmembrane domain-containing protein 6
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Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
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GO:0005125 [cytokine activity]
GO:0005615 [extracellular space]
GO:0006935 [chemotaxis]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0070062 [extracellular exosome]
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 183 aa
20.4 kDa 		No 3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.