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SMIM24

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.3TPM
GTEx:10.6RPKM
FANTOM5:825.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA045046

  

Endothelial cells

 Low  

Glandular cells

 High  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

30.3
overview Male, age 54 Sample 1
TPM: 44.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 20.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 43
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 26.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 20.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 18.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 42.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 25
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 31.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 66.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.8
Samples: 149

Max RPKM: 79.4
Min RPKM: 0.0
Std RPKM: 6.5
Median RPKM: 0.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 79.4
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 8.0
GTEX-V955-1726-SM-4JBHF 60-69 years, male 5.4
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 3.8
GTEX-XBED-1726-SM-47JYO 60-69 years, male 3.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 3.3
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 2.1
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 1.6
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 1.3
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 1.1
Show all
Colon - Transverse
RPKM: 18.0
Samples: 196

Max RPKM: 151.2
Min RPKM: 0.0
Std RPKM: 23.8
Median RPKM: 10.8
GTEX-R55G-1226-SM-48FDC 40-49 years, female 151.2
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 112.6
GTEX-ZTSS-1126-SM-5985O 40-49 years, male 98.7
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 91.4
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 87.2
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 85.9
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 82.8
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 77.1
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 75.1
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 74.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

825.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 825.6
FF:10014-101C5 62,83,84 years, mixed 825.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.