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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:27.7TPM
GTEx:17.2RPKM
FANTOM5:31.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA018885

  

Antibody CAB056156

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Not detected   Medium  

Peripheral nerve/ganglion

 Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

27.7
overview Male, age 54 Sample 1
TPM: 31.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 30.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 48.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 24.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 24.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 50.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 32.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 28
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.3
Samples: 149

Max RPKM: 117.4
Min RPKM: 5.7
Std RPKM: 13.9
Median RPKM: 16.6
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 117.4
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 74.3
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 72.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 63.2
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 52.0
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 50.6
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 41.9
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 41.3
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 39.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 39.0
Show all
Colon - Transverse
RPKM: 14.9
Samples: 196

Max RPKM: 63.7
Min RPKM: 3.5
Std RPKM: 9.7
Median RPKM: 11.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 63.7
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 55.1
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 54.7
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 44.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 44.2
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 38.8
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 38.4
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 36.2
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 35.4
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 35.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

31.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 31.4
FF:10014-101C5 62,83,84 years, mixed 31.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.