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PSMB5

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:72.6TPM
GTEx:36.2RPKM
FANTOM5:71.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Not detected
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA049518

  

Endothelial cells

 Medium  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

72.6
overview Male, age 54 Sample 1
TPM: 67.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 62
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 71.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 56.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 79.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 92.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 102.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 58.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 77.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 76.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 76.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 68.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 54.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

36.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 37.9
Samples: 149

Max RPKM: 62.0
Min RPKM: 18.9
Std RPKM: 7.4
Median RPKM: 37.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 62.0
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 60.5
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 59.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 55.9
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 54.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 52.5
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 51.6
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 51.4
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 50.1
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 48.6
Show all
Colon - Transverse
RPKM: 34.9
Samples: 196

Max RPKM: 74.7
Min RPKM: 12.9
Std RPKM: 8.7
Median RPKM: 33.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 74.7
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 64.6
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 57.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 57.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 54.8
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 53.7
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 53.5
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 53.3
GTEX-QMRM-1226-SM-447C6 50-59 years, male 52.8
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 52.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

71.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 71.7
FF:10014-101C5 62,83,84 years, mixed 71.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.