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PNN

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:38.9TPM
GTEx:61.7RPKM
FANTOM5:95.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
 

Antibody staining

Antibody HPA001378

  

Endothelial cells

 Medium  
 

COLON - HPA RNA-seq

Average TPM

38.9
overview Male, age 54 Sample 1
TPM: 34.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 33.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 34.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 40.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 24.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 41.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 43.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 55
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 44.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 36.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 47.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

61.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 64.1
Samples: 149

Max RPKM: 117.7
Min RPKM: 26.8
Std RPKM: 19.1
Median RPKM: 62.9
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 117.7
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 112.0
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 103.0
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 102.3
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 100.4
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 98.5
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 96.9
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 96.1
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 95.2
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 95.0
Show all
Colon - Transverse
RPKM: 60.0
Samples: 196

Max RPKM: 109.0
Min RPKM: 31.3
Std RPKM: 11.7
Median RPKM: 57.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 109.0
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 86.4
GTEX-1128S-1626-SM-5H12O 60-69 years, female 86.3
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 86.1
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 85.0
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 83.7
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 83.0
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 82.9
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 82.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 81.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

95.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 95.4
FF:10014-101C5 62,83,84 years, mixed 95.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.