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HM13

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:47.6TPM
GTEx:17.1RPKM
FANTOM5:148.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA045089

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

47.6
overview Male, age 54 Sample 1
TPM: 74.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 42.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 35.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 37.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 46.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 45.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 48.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 38.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 50.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 58.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 51.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 47.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 42
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 15.1
Samples: 149

Max RPKM: 31.9
Min RPKM: 10.8
Std RPKM: 3.1
Median RPKM: 14.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 31.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 27.3
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 25.2
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 23.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 22.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 22.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 21.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 21.4
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 21.4
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 21.2
Show all
Colon - Transverse
RPKM: 18.6
Samples: 196

Max RPKM: 55.1
Min RPKM: 9.0
Std RPKM: 6.5
Median RPKM: 16.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 55.1
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 49.2
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 41.6
GTEX-144GN-1126-SM-5LU33 50-59 years, male 36.3
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 35.0
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 33.7
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 33.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 33.2
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 32.5
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 30.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

148.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 148.6
FF:10014-101C5 62,83,84 years, mixed 148.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.