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EMD

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.6TPM
GTEx:42.3RPKM
FANTOM5:93.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA000609

  

Antibody CAB001545

  

Antibody CAB002029

  

Antibody CAB062552

  

Endothelial cells

 Low   Medium   Medium   Not detected  

Glandular cells

 Low   Low   Medium   Not detected  

Peripheral nerve/ganglion

 Medium   Medium   Medium  
       

COLON - HPA RNA-seq

Average TPM

13.6
overview Male, age 54 Sample 1
TPM: 21.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 18.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 9.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 9.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

42.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 52.2
Samples: 149

Max RPKM: 95.9
Min RPKM: 30.3
Std RPKM: 10.5
Median RPKM: 50.5
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 95.9
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 85.1
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 84.7
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 83.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 78.6
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 77.3
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 74.2
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 69.8
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 69.7
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 68.8
Show all
Colon - Transverse
RPKM: 34.9
Samples: 196

Max RPKM: 90.6
Min RPKM: 12.5
Std RPKM: 14.7
Median RPKM: 30.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 90.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 87.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 85.7
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 75.6
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 70.4
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 68.7
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 66.0
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 65.0
GTEX-Y114-1526-SM-4TT79 50-59 years, female 62.1
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 62.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

93.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 93.7
FF:10014-101C5 62,83,84 years, mixed 93.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.