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CLN5

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.8TPM
GTEx:3.2RPKM
FANTOM5:33.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA041788

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

18.8
overview Male, age 54 Sample 1
TPM: 22.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 22.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 18.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 18.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 16.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 18.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 18.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.4
Samples: 149

Max RPKM: 6.8
Min RPKM: 1.7
Std RPKM: 0.7
Median RPKM: 3.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 6.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 5.5
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 5.3
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 5.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 4.6
GTEX-145LS-2926-SM-5O99G 60-69 years, female 4.6
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 4.6
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 4.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 4.5
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 4.4
Show all
Colon - Transverse
RPKM: 3.0
Samples: 196

Max RPKM: 5.5
Min RPKM: 1.5
Std RPKM: 0.6
Median RPKM: 2.8
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 5.5
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 5.1
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 4.9
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 4.8
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 4.8
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 4.6
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 4.5
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 4.3
GTEX-S341-1426-SM-4AD6U 40-49 years, female 4.3
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 4.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

33.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 33.1
FF:10014-101C5 62,83,84 years, mixed 33.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.