Tissue expression of CTCF - Staining in adipose tissue

SOFT TISSUE - Expression summary

Protein expression

RNA expression

HPA:	16.8	TPM
GTEx:	13.0	RPKM
FANTOM5:	45.6	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Medium
Chondrocytes:	Low
Fibroblasts:	Medium
Peripheral nerve:	Medium

Antibody staining	Antibody HPA004122	Antibody CAB062550	Antibody CAB068181	Antibody CAB068182
Adipocytes	Medium
Chondrocytes	Not detected	Low	Not detected	Low
Fibroblasts	Medium	Medium	High
Peripheral nerve	Medium

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Medium
Fibroblasts:	Medium
Peripheral nerve:	Medium

Antibody staining	Antibody HPA004122	Antibody CAB062550	Antibody CAB068181	Antibody CAB068182
Adipocytes	Medium	Not detected	Not detected	High
Fibroblasts	Medium	Not detected	Medium	High
Peripheral nerve	Medium	Low	Medium	High

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	16.8

Female, age 80

Sample 1
TPM: 21.7

Cell types%

Adipocytes: 95
Other cell types: 5

Female, age 45

Sample 2
TPM: 11.8

Female, age 57

Sample 3
TPM: 11.4

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

Female, age 74

Sample 4
TPM: 21.7

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

Female, age 59

Sample 5
TPM: 17.3

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	13.0

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 13.4

Samples: 350

Max RPKM: 22.6
Min RPKM: 7.2
Std RPKM: 2.3
Median RPKM: 13.3

GTEX-13NZ9-0526-SM-5J1OX

50-59 years, male

22.6

GTEX-POYW-0726-SM-2XCEO

60-69 years, male

22.3

GTEX-OXRK-0326-SM-3NB3R

50-59 years, female

21.9

GTEX-1399T-2726-SM-5K7XK

60-69 years, male

20.4

GTEX-ZE7O-0226-SM-5S2N1

50-59 years, female

20.4

GTEX-QEL4-0326-SM-3GAE5

50-59 years, male

19.4

GTEX-Y8E4-0726-SM-4WWFN

40-49 years, male

18.5

GTEX-OIZH-0226-SM-2YUMH

50-59 years, male

18.3

GTEX-111FC-0226-SM-5N9B8

60-69 years, male

18.2

GTEX-S33H-1126-SM-2XCB6

30-39 years, male

18.2

Show all

Adipose - Visceral (Omentum)
RPKM: 12.2

Samples: 227

Max RPKM: 21.5
Min RPKM: 6.8
Std RPKM: 3.0
Median RPKM: 12.0

GTEX-X585-2526-SM-4QAS1

50-59 years, male

21.5

GTEX-13S86-0926-SM-5SI6I

40-49 years, male

20.2

GTEX-13IVO-2426-SM-5K7V9

70-79 years, male

19.1

GTEX-13W46-1226-SM-5SIAS

50-59 years, male

18.8

GTEX-11NV4-1426-SM-5BC4W

60-69 years, male

18.4

GTEX-13NZ9-2026-SM-5KM1U

50-59 years, male

18.2

GTEX-13PDP-1226-SM-5K7TW

60-69 years, male

17.7

GTEX-UPK5-1826-SM-3GAEB

40-49 years, male

17.7

GTEX-1399T-1326-SM-5PNVH

60-69 years, male

17.6

GTEX-13PL6-0926-SM-5KLYY

40-49 years, female

17.3

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	45.6

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 45.6

FF:10010-101C1

65,65,76 years, mixed

45.6