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COLON - Expression summary

RNA expression
HPA:15.7TPM
GTEx:11.2RPKM
FANTOM5:88.0Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

15.7
overview Male, age 54 Sample 1
TPM: 19.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 16.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 15.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 18.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 15
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 17
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 19
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.1
Samples: 149

Max RPKM: 16.9
Min RPKM: 6.6
Std RPKM: 1.7
Median RPKM: 11.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 16.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 15.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 15.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 15.3
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 15.1
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 14.8
GTEX-12696-1926-SM-5EGJT 60-69 years, male 14.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 14.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 14.3
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 14.3
Show all
Colon - Transverse
RPKM: 11.3
Samples: 196

Max RPKM: 21.0
Min RPKM: 6.9
Std RPKM: 1.9
Median RPKM: 11.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 21.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 18.3
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 15.9
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 15.8
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 15.8
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 15.5
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 15.3
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 15.2
GTEX-1128S-1626-SM-5H12O 60-69 years, female 14.9
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 14.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

88.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 88.0
FF:10014-101C5 62,83,84 years, mixed 88.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.