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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:191.3TPM
GTEx:62.9RPKM
FANTOM5:334.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA012122

  

Antibody HPA015130

  

Endothelial cells

 Low   Not detected  

Glandular cells

 Medium   Not detected  

Peripheral nerve/ganglion

 Low   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

191.3
overview Male, age 54 Sample 1
TPM: 159.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 280.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 243.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 251
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 186.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 116.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 195.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 175.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 129.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 179.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 181.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 196
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 192.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

62.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 40.0
Samples: 149

Max RPKM: 77.6
Min RPKM: 16.1
Std RPKM: 11.8
Median RPKM: 38.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 77.6
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 74.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 71.2
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 69.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 69.7
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 69.5
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 63.9
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 63.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 60.9
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 60.3
Show all
Colon - Transverse
RPKM: 80.4
Samples: 196

Max RPKM: 167.0
Min RPKM: 13.9
Std RPKM: 33.5
Median RPKM: 78.2
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 167.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 158.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 156.9
GTEX-R55G-1226-SM-48FDC 40-49 years, female 152.8
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 147.1
GTEX-13D11-0826-SM-5KLZJ 50-59 years, female 145.5
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 144.5
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 142.2
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 138.7
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 138.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

334.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 334.7
FF:10014-101C5 62,83,84 years, mixed 334.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.